Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24b21
         (482 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    23   2.3  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    23   2.3  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    21   6.9  

>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 80  NSKQLYVFILKMRLLHAVAV 139
           N+KQ +++ L +  LHA+ V
Sbjct: 4   NTKQAFIYSLALLCLHAIFV 23


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 80  NSKQLYVFILKMRLLHAVAV 139
           N+KQ +++ L +  LHA+ V
Sbjct: 4   NTKQAFIYSLALLCLHAIFV 23


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +2

Query: 116 RLLHAVAVVFTMLLFFVREKYVLAGVCPVS 205
           RL+HAV  +   LLF   ++      CP +
Sbjct: 244 RLVHAVNEIEKRLLFSHNDRLGFLTFCPTN 273


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,392
Number of Sequences: 438
Number of extensions: 2435
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13174803
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)