Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24b18
         (587 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   2.2  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   6.8  
U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.    21   9.0  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   9.0  
AF442147-1|AAL35348.1|   33|Apis mellifera abaecin precursor pro...    21   9.0  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 7/22 (31%), Positives = 10/22 (45%)
 Frame = +1

Query: 211 GKCYCADGFVPNQFHDRCVPCP 276
           G C+C  G+  +     C  CP
Sbjct: 245 GGCHCKPGYQADVEKQECTECP 266


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 73  TIFKHYYITAHRNHVLMYA 17
           T FK  Y++ H N  ++YA
Sbjct: 259 TQFKKIYMSRHENVSILYA 277


>U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.
          Length = 53

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -1

Query: 329 VPFPYLLQQGPKHFSPRPGHG 267
           VP P + Q G + F   PG G
Sbjct: 21  VPLPNVPQPGRRPFPTFPGQG 41


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 6/13 (46%), Positives = 7/13 (53%)
 Frame = +1

Query: 304 CCNRYGNGTLQCW 342
           C N Y   +L CW
Sbjct: 110 CVNPYDRDSLSCW 122


>AF442147-1|AAL35348.1|   33|Apis mellifera abaecin precursor
           protein.
          Length = 33

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -1

Query: 329 VPFPYLLQQGPKHFSPRPGHG 267
           VP P + Q G + F   PG G
Sbjct: 7   VPLPNVPQPGRRPFPTFPGQG 27


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,959
Number of Sequences: 438
Number of extensions: 4435
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17115420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)