Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24b16
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyc...    28   1.4  
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce...    27   1.8  
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    27   1.8  
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe...    27   3.1  
SPBC21B10.12 |rec6||meiotic recombination protein Rec6|Schizosac...    26   4.1  
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr...    25   9.5  
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        25   9.5  
SPAC9E9.10c |cbh1|cbh|centromere binding protein |Schizosaccharo...    25   9.5  
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po...    25   9.5  

>SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 313

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 437 TTVDNLNDIVYLATDNGVYK 496
           T +D LND  Y   +NGVYK
Sbjct: 166 TKIDELNDYFYDTVNNGVYK 185


>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 335

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 426 NPATLIVSNSPLGRNTCKLIFISSLIFVKNMLP 328
           NP TL  S    G + C++++ SSL+   N+ P
Sbjct: 31  NPFTLCFSKKANGASICEMLYESSLLAFVNISP 63


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 6/107 (5%)
 Frame = +2

Query: 248 INNFYYSLAERK-NLSGIPADISIHWKTGNIFFTKISEEMKMSLQVLRPSGEFETIKVAG 424
           + N+Y SL +   ++S I  +    +KT NI  + ++ E K  L+V   + E    ++  
Sbjct: 566 LKNYYSSLIDSSTSISNINFEAP-RYKT-NIVHS-LNNEQKYVLEVKNGTSEKNPTRIVA 622

Query: 425 L--GQSTTVDNLNDIVYLATDNGVYKYK---DDGSIQLYAALGEDVM 550
           L  G +  +D L   V L T + ++ +    DDGS+ LY+  G  ++
Sbjct: 623 LENGNTKWMDYLPRPVILVTGS-IHFWSIACDDGSLHLYSLTGSRLL 668


>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -3

Query: 542 PLLKPRKAVSSRRLCIYTRHYQ 477
           P+ KP + V  RRL I   HYQ
Sbjct: 658 PITKPSEPVPMRRLTIVCNHYQ 679


>SPBC21B10.12 |rec6||meiotic recombination protein
           Rec6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +2

Query: 176 SPVMTRESLIKQINTQHFCANILKINNFYYSLAERKN 286
           S ++TRESL K     HF   + K     Y+   RKN
Sbjct: 55  SRILTRESLDKSFEQSHFQLLMYKKCKLIYTRTLRKN 91


>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 585

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 265 IVKIVDLEYIRAEMLCVYLL 206
           I  ++DLE IR  + C+Y+L
Sbjct: 276 ISNLIDLECIRRSVFCLYIL 295


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 222 NISARIYSRSTIFTIRWRRERI*AASRPTLASTGRRVT 335
           N+S    +++T F I+ +   + AA R  L   GRR T
Sbjct: 189 NVSTASKTKNTTFLIQGKTSAVKAARRQILKLIGRRET 226


>SPAC9E9.10c |cbh1|cbh|centromere binding protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 514

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 329 GNIFFTKISEEMKMSLQVLRPSGEFET 409
           GN+  +K SE +K   + +RPS E ET
Sbjct: 412 GNLISSKGSEAVKQINEYIRPSEEDET 438


>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 937

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 15/63 (23%), Positives = 31/63 (49%)
 Frame = +2

Query: 230 CANILKINNFYYSLAERKNLSGIPADISIHWKTGNIFFTKISEEMKMSLQVLRPSGEFET 409
           C N +K   FY+ +      SGIP+  S    +      K++E  +++L ++  + E E 
Sbjct: 39  CKNDIK-KTFYFGI------SGIPSQFSFEIDSTYAHTLKLAENQEINLSIIDCTHEIEQ 91

Query: 410 IKV 418
           +++
Sbjct: 92  LEI 94


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,557,987
Number of Sequences: 5004
Number of extensions: 50640
Number of successful extensions: 131
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)