Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte24b14
(621 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 334 4e-93
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 326 2e-90
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 160 2e-40
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 109 3e-25
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 28 0.95
SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa... 28 1.3
SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces pom... 26 3.8
SPBC725.17c |rrn11||RNA polymerase I transcription factor subuni... 26 5.1
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 26 5.1
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo... 25 6.7
SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein] reductase|Schiz... 25 6.7
SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ... 25 8.8
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 334 bits (822), Expect = 4e-93
Identities = 147/190 (77%), Positives = 169/190 (88%)
Frame = +3
Query: 48 KVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIV 227
+VST+VVEPYNS+LTTH TL++SDC FMVDNEA YDICRRNLDIERPTY NLNRLI Q+V
Sbjct: 180 QVSTSVVEPYNSVLTTHATLDNSDCTFMVDNEACYDICRRNLDIERPTYENLNRLIAQVV 239
Query: 228 SSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNAC 407
SSITASLRF G+LNVDL EFQTNLVPYPRIHFPL TY+P++SA KA+HE +V EITN C
Sbjct: 240 SSITASLRFAGSLNVDLNEFQTNLVPYPRIHFPLVTYSPIVSAAKAFHESNSVQEITNQC 299
Query: 408 FEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGI 587
FEP NQMVKCDPR G+YMA C+LYRGDV+P+DV AA+ +IK++RTIQFVDWCPTGFK+GI
Sbjct: 300 FEPYNQMVKCDPRTGRYMATCLLYRGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGI 359
Query: 588 NYQPPTVVPG 617
Y+PP VPG
Sbjct: 360 CYEPPQHVPG 369
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 326 bits (801), Expect = 2e-90
Identities = 144/190 (75%), Positives = 166/190 (87%)
Frame = +3
Query: 48 KVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIV 227
+VST+VVEPYNS+LTTH TL+ +DC FMVDNE+ YDICRRNLDIERP+Y NLNRLI Q+V
Sbjct: 176 QVSTSVVEPYNSVLTTHATLDLADCTFMVDNESCYDICRRNLDIERPSYENLNRLIAQVV 235
Query: 228 SSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNAC 407
SSITASLRF+G+LNVDL EFQTNLVPYPRIHFPL TYAP++SA KA+HE +V EITN C
Sbjct: 236 SSITASLRFEGSLNVDLAEFQTNLVPYPRIHFPLVTYAPIVSAAKAFHESNSVQEITNQC 295
Query: 408 FEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGI 587
FEP NQMVKCDPR G+YMA C+LYRGDV+P+DV AA+ TIK KRTIQFVDWCPTGFK+GI
Sbjct: 296 FEPYNQMVKCDPRAGRYMATCLLYRGDVIPRDVQAAVTTIKAKRTIQFVDWCPTGFKIGI 355
Query: 588 NYQPPTVVPG 617
+PP + G
Sbjct: 356 CDRPPQHIEG 365
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 160 bits (388), Expect = 2e-40
Identities = 72/185 (38%), Positives = 111/185 (60%)
Frame = +3
Query: 48 KVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIV 227
K S VVEPYN+ L+ H +E+SD F +DNEA+ I L I+ P+Y +LN L+ ++
Sbjct: 174 KSSDTVVEPYNATLSMHQLVENSDETFCIDNEALSSIFANTLKIKSPSYDDLNHLVSAVM 233
Query: 228 SSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNAC 407
+ +T S RF G LN DL + N+VP+PR+HF + +AP+ + + + ++V E+T
Sbjct: 234 AGVTTSFRFPGELNSDLRKLAVNMVPFPRLHFFMVGFAPLAAIGSSSFQAVSVPELTQQM 293
Query: 408 FEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGI 587
F+ N MV DPRHG+Y+ L+RG V K+V+ I +++TK + FV+W P +
Sbjct: 294 FDANNMMVAADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTKNSAYFVEWIPDNVLKAV 353
Query: 588 NYQPP 602
PP
Sbjct: 354 CSVPP 358
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 109 bits (262), Expect = 3e-25
Identities = 56/190 (29%), Positives = 99/190 (52%), Gaps = 4/190 (2%)
Frame = +3
Query: 51 VSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVS 230
VS VV+PYNS+L ++D ++DN A+ I L + PT+ N+L+ ++S
Sbjct: 178 VSDVVVQPYNSLLALKRLTLNADSVVVLDNAALAHIAADRLHTQNPTFHQQNQLVSTVMS 237
Query: 231 SITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVIS---AEKAYHEQLTVAEITN 401
+ T +LR+ G +N DL +L+P PR HF L +Y P + E + TV ++
Sbjct: 238 ASTTTLRYPGYMNNDLVSIIASLIPSPRCHFLLTSYTPFTNQQVEEAKAIRKTTVLDVMR 297
Query: 402 ACFEPANQMVKCDP-RHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFK 578
P NQMV +P + +++ + +G+ P DV+ ++ I+ +R F+ W P +
Sbjct: 298 RLLLPKNQMVSVNPSKKSCFISILDIIQGEADPADVHKSLLRIRERRYASFIPWGPASIQ 357
Query: 579 VGINYQPPTV 608
V ++ + P +
Sbjct: 358 VALSKKSPYI 367
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 28.3 bits (60), Expect = 0.95
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = +3
Query: 393 ITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAI 518
+ ACFEP N C H K C L + KD N ++
Sbjct: 361 LCGACFEPINAKCYCG-LHSKTYPCSSLPSPSISKKDENGSV 401
>SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 707
Score = 27.9 bits (59), Expect = 1.3
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = +1
Query: 520 QPSKQ-REPSSSWTGAQLVSRWASITSPRLWCRAE 621
QPSK R+P SW+ + WA + S W E
Sbjct: 419 QPSKDSRKPVQSWSYVHSLDFWARLLSQAAWLSRE 453
>SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 409
Score = 26.2 bits (55), Expect = 3.8
Identities = 30/127 (23%), Positives = 51/127 (40%), Gaps = 1/127 (0%)
Frame = +3
Query: 63 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 242
V E +I + L SD +NE YDI +N + E N I + + +
Sbjct: 47 VEEVVEAINGSPDLLSESDVENAKNNEHTYDIDNKNFNFEPKNSVNKTETIREELDQAAS 106
Query: 243 SLRFDGALNVDLTE-FQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPA 419
+ + L++ E F+ +V AT A + A+ H + + E+ E A
Sbjct: 107 KILIE-TLDLHQKEGFEETIVTEE------ATDAVDLEAKGTTHGENDLDEVPTELNELA 159
Query: 420 NQMVKCD 440
N++V D
Sbjct: 160 NEVVDVD 166
>SPBC725.17c |rrn11||RNA polymerase I transcription factor subunit
Rrn11 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 200
Score = 25.8 bits (54), Expect = 5.1
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +2
Query: 293 EPGAVPAHPLPARHVRARHLRGE-GLPRAAHGRRDHQRVLRA 415
E +P PLP+R + RH+ L R+D+ R RA
Sbjct: 22 ESSVIPPIPLPSRRYKTRHIDALCSLMHLCLLRKDYPRASRA 63
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 25.8 bits (54), Expect = 5.1
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = -2
Query: 218 SNKSIQVSVRRPFDVQVASTDVVDGFIVHHERAVRVLEGGV 96
+N+ + + +++ + T F + ERA+RVL+G V
Sbjct: 133 ANEKQKTDFEKSYNINIIDTPGHIDFTIEVERALRVLDGAV 173
>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 25.4 bits (53), Expect = 6.7
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Frame = +2
Query: 263 AERGPDGVPDEPG--AVPAHPL-PARH-VRARHLRGEGLPRAAHGRRD 394
+E G GVPDEP +P H L H + G G A H R++
Sbjct: 634 SEFGTTGVPDEPNEEELPKHVLKQVEHIINESAAHGVGKCNACHARQE 681
>SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein]
reductase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 372
Score = 25.4 bits (53), Expect = 6.7
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +2
Query: 560 VPNWFQGGHQLPAPDCGAGR 619
VP W QGG DC +GR
Sbjct: 242 VPEWIQGGEVKLGIDCVSGR 261
>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 780
Score = 25.0 bits (52), Expect = 8.8
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = -2
Query: 545 DGSLCFDGCDGRIHVLRHNVSSVQHATSHV 456
D SLC D G VLR++V SV++A HV
Sbjct: 308 DISLCMDRAIGIALVLRNSVLSVENA-KHV 336
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,590,076
Number of Sequences: 5004
Number of extensions: 52747
Number of successful extensions: 179
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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