Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24b07
         (679 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces...    29   0.62 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    29   0.82 
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    28   1.1  
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At...    28   1.4  
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ...    27   3.3  
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth...    26   4.4  
SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr 2|||...    26   5.8  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    26   5.8  

>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 609

 Score = 29.1 bits (62), Expect = 0.62
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -2

Query: 657 RKHGYPXDRTVVVFRTTSTGHKPRSAVISDEASDPS 550
           ++HGY   R  +  R  S   K R AVIS+E  +PS
Sbjct: 550 QQHGYSDPRQTLPTRLDSCAAKLREAVISNENLNPS 585


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 28.7 bits (61), Expect = 0.82
 Identities = 39/135 (28%), Positives = 50/135 (37%), Gaps = 1/135 (0%)
 Frame = -3

Query: 599 GTSRGVQSSLTKQAIRLQTTSPPWQ*HTRQGSAGSTNFSPLS*TRPSCSQSH*YVGQQWS 420
           G S  + + +T       T+S          S+  TN SPL  T  SC+ S        S
Sbjct: 182 GGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPTGGSS 241

Query: 419 GRCTALQPGLDSHCCFSHWTP-PPSEHLHFSQGSEPGNSSPGRYTTSPSAQLPSLSPKST 243
              T + P +      S   P PP+     S  S   NSSP   TTS S    +  P + 
Sbjct: 242 SLSTPITPTVPPTSTSSTSIPIPPT-----STSSTDTNSSP-LPTTSTSCTTSTSIPPTG 295

Query: 242 LVTFGSGPTGPPQHT 198
             T    PT PP  T
Sbjct: 296 NSTTPVTPTVPPTST 310


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = -2

Query: 441 IRWTAMVGSMHSLAARPGFALLLLTLDPPSIGALALLAGV*TW 313
           + W+ M+G + S+   PG++   +  D  S+    L+ G+  W
Sbjct: 252 LTWSVMIGGLSSVFGDPGYSQRAIASDAKSVFQGYLMGGLCWW 294


>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 350 SEHLHFSQGSEPGNSSPGRYTTSPSAQLPSLSPKSTL 240
           + HL+ S+GS+   S PG+  T  S   P   P ++L
Sbjct: 495 AHHLNASEGSKSSGSFPGKVQTLTSGISPVAHPHNSL 531


>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
           Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -1

Query: 427 NGRVDAQPCSQAWIRIAASHIGPPLH 350
           NGRV+ + C  AW  +AA+H+ P  H
Sbjct: 182 NGRVNIEKCLIAW--MAAAHLKPKDH 205


>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
            Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1323

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 15/62 (24%), Positives = 30/62 (48%)
 Frame = +2

Query: 293  IFPETNSQVQTPARSASAPMEGGSNVRSSNANPGLAARLCIDPTIAVQRISVIASKKVVS 472
            I+ ET+ ++Q    +     +   N+  +N +PGL   L  DP ++V     + S+  V+
Sbjct: 1005 IWHETSYKMQEIRDNPECARQEMENIADNN-DPGLGYHLTFDPNVSVTADLALTSRPKVA 1063

Query: 473  TI 478
             +
Sbjct: 1064 IL 1065


>SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 129 KVKRRHGVAKIFNHFASSIPSFYRMLGRSGGSATECN 239
           K+KRRHG   + +  A SI +    L  SGG+ +  N
Sbjct: 37  KIKRRHGAGILGSVNALSIDNTIHQLMVSGGANSSIN 73


>SPAC9G1.10c |||inositol polyphosphate phosphatase
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +1

Query: 433  PTYQCDCEQEGRVYDNGEKLVDPADPCRVCY 525
            PTY+ D   E   YD+ EK   PA   R+CY
Sbjct: 1064 PTYKYDVHSEQ--YDSSEKKRVPAWCDRICY 1092


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,126,371
Number of Sequences: 5004
Number of extensions: 69607
Number of successful extensions: 215
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)