Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24b06
         (644 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0503 - 19756561-19757991,19758606-19759967                       28   5.5  
01_06_0873 + 32617428-32617532,32618166-32618234,32619195-326193...    28   5.5  
06_01_0847 - 6451525-6451678,6452870-6453066,6454300-6454591,645...    28   7.3  

>12_02_0503 - 19756561-19757991,19758606-19759967
          Length = 930

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/70 (22%), Positives = 32/70 (45%)
 Frame = -1

Query: 452 FFQLSHLDGEAEERLICATCVLRLRDASLFRRQVLLCEETLLKSRMTTGMFGIQSNCRIQ 273
           F Q  H        L+C   ++ L DAS F+R   L    +++    + + G+++   ++
Sbjct: 712 FLQEEHCRVLTVLSLVCCHMLISLPDASDFKRMSKLESIRIIECNRLSSLGGLEALSHLK 771

Query: 272 IFK*TQCAKV 243
           I +   CA +
Sbjct: 772 ILRIEHCANL 781


>01_06_0873 +
           32617428-32617532,32618166-32618234,32619195-32619380,
           32619687-32619776,32620389-32620462,32621149-32621260,
           32621413-32621468,32621826-32621880,32621965-32622021,
           32622696-32622797,32623467-32623547,32623756-32623808,
           32625245-32625314,32626540-32626603,32627339-32627487,
           32627564-32627719,32628011-32628108,32628763-32628847,
           32628932-32628997,32629066-32629125,32629408-32629494,
           32630307-32630360,32630538-32630576,32630651-32630779,
           32630859-32630911,32630984-32631032,32632240-32632298,
           32633111-32633259,32633338-32633492,32633719-32633847,
           32633932-32634017,32634220-32634335,32634429-32634541,
           32635335-32635458,32635540-32635658,32636289-32636490,
           32636586-32636757,32637852-32638176,32638442-32638529,
           32638970-32639059,32639169-32639370,32639681-32639705
          Length = 1450

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = -3

Query: 567 KYYFLLESLLNAFGTDDRPSV*SS--RTIFRHL 475
           K +F + S+L   G DDRP V +S  RT+F+ L
Sbjct: 835 KLFFSVFSVLQKLGADDRPEVRNSAVRTLFQTL 867


>06_01_0847 -
           6451525-6451678,6452870-6453066,6454300-6454591,
           6454622-6454654,6454869-6455102,6455204-6455259,
           6455552-6456754
          Length = 722

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 231 HRRSDFSALSSFEDLYSTIRLYPKHTCGHPA 323
           H  S    L+ F +LY+ + ++   TCGHPA
Sbjct: 523 HELSREEKLAFFINLYNMMAIHALVTCGHPA 553


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,694,234
Number of Sequences: 37544
Number of extensions: 299198
Number of successful extensions: 700
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)