Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24b01
         (614 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein L13/L16|Schiz...    28   1.2  
SPBC839.13c |rpl1601||60S ribosomal protein L13/L16|Schizosaccha...    28   1.2  
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po...    27   1.6  
SPAC27D7.08c |||DUF890 family protein|Schizosaccharomyces pombe|...    26   5.0  
SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr...    25   6.6  

>SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 19/64 (29%), Positives = 29/64 (45%)
 Frame = +1

Query: 13  QTLDNCKITCVKCKIRLN*HYRNHRNSIK*KAQFARNVLQKPSHGSFQKPQIVKMYQKLL 192
           Q L   K+  V+C+  LN      RN +K  A   +     PS G+F      +++QK +
Sbjct: 27  QLLGGQKVVVVRCE-ELNISGHFFRNKLKYLAYLRKACRYNPSRGAFHFRAPSRIFQKAV 85

Query: 193 RPSL 204
           R  L
Sbjct: 86  RGML 89


>SPBC839.13c |rpl1601||60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 19/64 (29%), Positives = 29/64 (45%)
 Frame = +1

Query: 13  QTLDNCKITCVKCKIRLN*HYRNHRNSIK*KAQFARNVLQKPSHGSFQKPQIVKMYQKLL 192
           Q L   K+  V+C+  LN      RN +K  A   +     PS G+F      +++QK +
Sbjct: 27  QLLGGQKVVVVRCE-ELNISGHFFRNKLKYLAYLRKACRYNPSRGAFHFRAPSRIFQKAV 85

Query: 193 RPSL 204
           R  L
Sbjct: 86  RGML 89


>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1076

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -3

Query: 522 SNPVYPFLFFGTEGSREQCPIYRS 451
           SN +Y FLF   E   EQ PIY S
Sbjct: 545 SNSIYFFLFAKDETVSEQAPIYNS 568


>SPAC27D7.08c |||DUF890 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 385

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 425 PMVPSMHTRLRYIGHCSLEPSVPKNRKGYTGFD 523
           PMVP+  T +RYI       S  K++K   G D
Sbjct: 49  PMVPNRATYIRYIHDLLSSTSGQKDKKRIIGLD 81


>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 537

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 186 FLIHLYNLWFLKASVTWF 133
           FLI L  +WF  A + WF
Sbjct: 393 FLISLLTVWFFPAGLFWF 410


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,485,164
Number of Sequences: 5004
Number of extensions: 51195
Number of successful extensions: 135
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)