Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24b01
         (614 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0130 - 12609417-12610462,12610786-12611040,12611139-126112...    28   5.1  
02_01_0398 - 2899311-2899454,2900679-2900807,2900927-2900998,290...    27   8.9  

>09_03_0130 -
           12609417-12610462,12610786-12611040,12611139-12611253,
           12611376-12611428,12611854-12612114,12612252-12612302,
           12612412-12612660,12612779-12613007,12613292-12613666
          Length = 877

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 519 NPVYPFLFFGTEGSREQCPIYRSLVCIEG 433
           NPVY +LFF T G +    +   ++CI G
Sbjct: 361 NPVYIYLFFQTNGIKAWSALGGCVLCITG 389


>02_01_0398 -
           2899311-2899454,2900679-2900807,2900927-2900998,
           2901667-2901790,2901835-2901882,2902145-2902197,
           2902932-2903030,2903141-2903539
          Length = 355

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 117 KKCPPKTKSRKLSKTTDCKDVSEIIEALTLDE 212
           KK     +SRKL++  DC  +S I +A  LD+
Sbjct: 314 KKLDGFLESRKLNEGLDCDTISRICQAYDLDK 345


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,574,736
Number of Sequences: 37544
Number of extensions: 272969
Number of successful extensions: 592
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)