Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24b01
         (614 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY060644-1|AAL28192.1|  275|Drosophila melanogaster GH07456p pro...    29   3.8  
AJ133650-1|CAB38635.1|  275|Drosophila melanogaster RNA polymera...    29   3.8  
AE014134-2412|AAF53342.1|  275|Drosophila melanogaster CG7885-PA...    29   3.8  
AL109630-3|CAB65872.1|  975|Drosophila melanogaster EG:BACR7A4.1...    29   6.6  
AE014298-122|AAF45563.1|  975|Drosophila melanogaster CG3711-PA,...    29   6.6  

>AY060644-1|AAL28192.1|  275|Drosophila melanogaster GH07456p
           protein.
          Length = 275

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -1

Query: 554 IIPLHLKMMENRIQYILSCFLVQKAPENNVQYTVVSYASKEPLEH 420
           +IPL    +  R+QY   C  +   PE +V++T+    S+E   H
Sbjct: 70  LIPLISDDVVERLQYTRDCICLDFCPECSVEFTLDVKCSEEQTRH 114


>AJ133650-1|CAB38635.1|  275|Drosophila melanogaster RNA polymerase
           II p33 subunit protein.
          Length = 275

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -1

Query: 554 IIPLHLKMMENRIQYILSCFLVQKAPENNVQYTVVSYASKEPLEH 420
           +IPL    +  R+QY   C  +   PE +V++T+    S+E   H
Sbjct: 70  LIPLISDDVVERLQYTRDCICLDFCPECSVEFTLDVKCSEEQTRH 114


>AE014134-2412|AAF53342.1|  275|Drosophila melanogaster CG7885-PA,
           isoform A protein.
          Length = 275

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -1

Query: 554 IIPLHLKMMENRIQYILSCFLVQKAPENNVQYTVVSYASKEPLEH 420
           +IPL    +  R+QY   C  +   PE +V++T+    S+E   H
Sbjct: 70  LIPLISDDVVERLQYTRDCICLDFCPECSVEFTLDVKCSEEQTRH 114


>AL109630-3|CAB65872.1|  975|Drosophila melanogaster EG:BACR7A4.19
           protein.
          Length = 975

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 16/58 (27%), Positives = 25/58 (43%)
 Frame = -1

Query: 575 LFLKCH*IIPLHLKMMENRIQYILSCFLVQKAPENNVQYTVVSYASKEPLEHSFLYYV 402
           L L+ H +IP H  ++ +R  Y    F     P+N V   +   +      HS L Y+
Sbjct: 805 LVLEDH-VIPAHKSVLSSRCTYFQGMFRSFMPPDNTVNIQIGEISPSLEAFHSLLRYI 861


>AE014298-122|AAF45563.1|  975|Drosophila melanogaster CG3711-PA,
           isoform A protein.
          Length = 975

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 16/58 (27%), Positives = 25/58 (43%)
 Frame = -1

Query: 575 LFLKCH*IIPLHLKMMENRIQYILSCFLVQKAPENNVQYTVVSYASKEPLEHSFLYYV 402
           L L+ H +IP H  ++ +R  Y    F     P+N V   +   +      HS L Y+
Sbjct: 805 LVLEDH-VIPAHKSVLSSRCTYFQGMFRSFMPPDNTVNIQIGEISPSLEAFHSLLRYI 861


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,286,344
Number of Sequences: 53049
Number of extensions: 498799
Number of successful extensions: 1356
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1356
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2517878700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)