Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte24b01
(614 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006731-1|AAF60483.1| 4900|Caenorhabditis elegans Temporarily a... 32 0.28
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 31 0.86
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 31 0.86
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 31 0.86
AF125459-12|AAD12832.1| 533|Caenorhabditis elegans Hypothetical... 29 2.0
AF025470-3|AAB71057.1| 394|Caenorhabditis elegans Hypothetical ... 29 2.0
U23176-6|AAC46718.1| 1374|Caenorhabditis elegans Hypothetical pr... 29 2.6
U23484-8|AAC46765.1| 1200|Caenorhabditis elegans Masculinisation... 27 8.1
AF286899-1|AAG01332.1| 1200|Caenorhabditis elegans sex determini... 27 8.1
AF016666-7|AAB66087.1| 196|Caenorhabditis elegans Hypothetical ... 27 8.1
>AC006731-1|AAF60483.1| 4900|Caenorhabditis elegans Temporarily
assigned gene nameprotein 80 protein.
Length = 4900
Score = 32.3 bits (70), Expect = 0.28
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 434 PSMHTRLRYIGHCSLEPSVPKNRKGYTGF-DFPSSSDEEELSSGILK 571
P T + Y H S PSV ++ + T F P++SDEEE+ G LK
Sbjct: 4618 PLRRTSITYTSHFS--PSVIRDLRSSTSFTSVPAASDEEEIVKGKLK 4662
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 30.7 bits (66), Expect = 0.86
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -2
Query: 142 DLVFGGHFLQTEPFILLNFYDYDNVNLVLF 53
D+ G + T+ + LNFYDYD + L +F
Sbjct: 8632 DIEAGEESIHTDALVDLNFYDYDQMELSIF 8661
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 30.7 bits (66), Expect = 0.86
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -2
Query: 142 DLVFGGHFLQTEPFILLNFYDYDNVNLVLF 53
D+ G + T+ + LNFYDYD + L +F
Sbjct: 8652 DIEAGEESIHTDALVDLNFYDYDQMELSIF 8681
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 30.7 bits (66), Expect = 0.86
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -2
Query: 142 DLVFGGHFLQTEPFILLNFYDYDNVNLVLF 53
D+ G + T+ + LNFYDYD + L +F
Sbjct: 8652 DIEAGEESIHTDALVDLNFYDYDQMELSIF 8681
>AF125459-12|AAD12832.1| 533|Caenorhabditis elegans Hypothetical
protein Y25C1A.4 protein.
Length = 533
Score = 29.5 bits (63), Expect = 2.0
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = +3
Query: 90 FNKMKGSVCKKCPPKTKSRKLSKTTDCKDVSEIIEALTLDEES*LFMSKLLNRINR 257
F++ G C K + K+ CKDV + L EE+ + LL RI++
Sbjct: 368 FDRQSGGWCMKVFTGFHAAKVDAEAACKDVGATLSGLENKEEAIFIQNALLARISQ 423
>AF025470-3|AAB71057.1| 394|Caenorhabditis elegans Hypothetical
protein W10D9.3 protein.
Length = 394
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/54 (24%), Positives = 30/54 (55%)
Frame = -2
Query: 523 IESSISFPVFWYRRLQRTMSNIP*SRMHRRNHWNTAFFIMWRFKFFHFKLRRSR 362
+++S+ F V R++++ ++ + + N WN F+M KF +++ RS+
Sbjct: 124 LDNSMDFFVEIQRKMKKFDKSVSLEKKYMENDWNCFDFVMEYMKFTNYRNYRSK 177
>U23176-6|AAC46718.1| 1374|Caenorhabditis elegans Hypothetical protein
F21H12.6 protein.
Length = 1374
Score = 29.1 bits (62), Expect = 2.6
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -1
Query: 548 PLHLKMMENRIQYILSCFLVQKAPEN 471
P HL +++NR++ ++ LV + PEN
Sbjct: 1111 PDHLPLLQNRVKQLMQAKLVDQTPEN 1136
>U23484-8|AAC46765.1| 1200|Caenorhabditis elegans Masculinisation of
germline protein5 protein.
Length = 1200
Score = 27.5 bits (58), Expect = 8.1
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +1
Query: 118 RNVLQKPSHGSFQK-PQIVKMYQKLLRPSL*MRKVSYLCRSYLIESTGTFFK 270
+NV PS FQ+ P+ V ++ ++ MR+V+ + +L+E +FFK
Sbjct: 1106 QNVYIHPSSACFQQQPEWVVYHELVMTTKEYMREVTAIDPKWLVEFAPSFFK 1157
>AF286899-1|AAG01332.1| 1200|Caenorhabditis elegans sex determining
protein MOG-5 protein.
Length = 1200
Score = 27.5 bits (58), Expect = 8.1
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +1
Query: 118 RNVLQKPSHGSFQK-PQIVKMYQKLLRPSL*MRKVSYLCRSYLIESTGTFFK 270
+NV PS FQ+ P+ V ++ ++ MR+V+ + +L+E +FFK
Sbjct: 1106 QNVYIHPSSACFQQQPEWVVYHELVMTTKEYMREVTAIDPKWLVEFAPSFFK 1157
>AF016666-7|AAB66087.1| 196|Caenorhabditis elegans Hypothetical
protein B0281.1 protein.
Length = 196
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +2
Query: 536 SDEEELSSGILKTRXLSDKYKKKVR 610
S+ E+L + +LKT+ L +K ++KVR
Sbjct: 91 SELEKLKTSLLKTKKLQEKLERKVR 115
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,582,558
Number of Sequences: 27780
Number of extensions: 275986
Number of successful extensions: 764
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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