Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte24a23
(638 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC688.02c |mis14||kinetochore protein Mis14 |Schizosaccharomyc... 27 1.7
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||... 27 1.7
SPCC16C4.08c |skb15||Shk1 kinase binding protein 15|Schizosaccha... 23 2.5
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po... 27 3.0
SPBC56F2.09c |arg5||arginine specific carbamoyl-phosphate syntha... 26 4.0
SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces pom... 26 4.0
SPBC1685.10 |rps27||40S ribosomal protein S27|Schizosaccharomyce... 26 4.0
SPAC24H6.12c |uba3||NEDD8 activating enzyme|Schizosaccharomyces ... 26 5.3
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ... 25 7.0
SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase... 25 9.2
>SPAC688.02c |mis14||kinetochore protein Mis14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 210
Score = 27.5 bits (58), Expect = 1.7
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = -3
Query: 144 LNELLHATFSIIQSNSVI 91
LNEL+ +TFSIIQ N I
Sbjct: 64 LNELIESTFSIIQENVTI 81
>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
1|||Manual
Length = 601
Score = 27.5 bits (58), Expect = 1.7
Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +3
Query: 435 LFRHSQTRVVKDE-ESETKSNKSFSDKNEGKCVEYIEKSTSFTSRPILKTI 584
L R+ T ++ D E + S ++ D+ E + +E +EK T + + + KT+
Sbjct: 454 LLRNGDTLIIVDVIECDDPSARAVKDRMESEQLETLEKITKYILKLLSKTV 504
>SPCC16C4.08c |skb15||Shk1 kinase binding protein
15|Schizosaccharomyces pombe|chr 3|||Manual
Length = 341
Score = 22.6 bits (46), Expect(2) = 2.5
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +3
Query: 282 LNAISTCREKSIQTEDNLTVLSLAPIDSALVERINLMRRNI 404
LNA+ + K I DN TVL L D ++ ++ +
Sbjct: 202 LNALCLYQSKLIVGRDNGTVLVLDTSDGKILHEFTAHKKRV 242
Score = 22.6 bits (46), Expect(2) = 2.5
Identities = 13/56 (23%), Positives = 27/56 (48%)
Frame = +3
Query: 414 TCTVIMSLFRHSQTRVVKDEESETKSNKSFSDKNEGKCVEYIEKSTSFTSRPILKT 581
TC V M +S+ + V+DE ++ +S S + + + E ++ P+ +T
Sbjct: 283 TCMVAMLADSNSEPKNVEDEAAKRQSLDSETSETSSESESESEYYSTSKQPPVKRT 338
>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1159
Score = 26.6 bits (56), Expect = 3.0
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +2
Query: 119 NVACSSSFKFNVPSNNAEGTWGNIFSFRASGASFAERAIS 238
N A SS F FN+ + E N FSF G A ++S
Sbjct: 660 NTAGSSPFSFNLTKESKEVPPTNSFSFAKKGKDEANDSLS 699
>SPBC56F2.09c |arg5||arginine specific carbamoyl-phosphate synthase
Arg5 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 415
Score = 26.2 bits (55), Expect = 4.0
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = -2
Query: 121 IFNYSVEFCNKKIHNFFLNHYFTLESHCIGTI 26
I NY V C K+ N L H+ + C G +
Sbjct: 101 IGNYGVPDCKKRDENGLLRHFESPHIQCAGVV 132
>SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 184
Score = 26.2 bits (55), Expect = 4.0
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 587 LDRFKYWSTCKRCTLFYVLHTFAFIF 510
L FK+W + R TLF ++ +F IF
Sbjct: 113 LPEFKFWYSSMRATLFALVASFFRIF 138
>SPBC1685.10 |rps27||40S ribosomal protein S27|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 83
Score = 26.2 bits (55), Expect = 4.0
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +3
Query: 399 NISCPTCTVIMSLFRHSQTRVV 464
++ CP C I ++F H+QT V+
Sbjct: 34 DVKCPGCFNITTVFSHAQTVVI 55
>SPAC24H6.12c |uba3||NEDD8 activating enzyme|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 444
Score = 25.8 bits (54), Expect = 5.3
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Frame = +3
Query: 288 AISTCREK-SIQTEDNLTV---LSLAPIDSALVERINLMRRNISCPTCTVIMSLFRHSQT 455
A S C E I TE N + + D A NL +R+ CP C V+ ++ S +
Sbjct: 307 AASCCNEALKILTESNPFLDNYMMYVGEDGAYTYTFNLEKRS-DCPVCGVLSEVYDISAS 365
Query: 456 RVVKDEESETKSNKSFSDKN 515
V ++ +KS++ +N
Sbjct: 366 STVTLKDILNHYSKSYNLQN 385
>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 444
Score = 25.4 bits (53), Expect = 7.0
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +3
Query: 438 FRHSQTRVVKDEESETKSNKSFSDKNEGKCVEYIEKSTS 554
+ S+TR+ S +SF+DK + +E +EK S
Sbjct: 65 YAKSRTRLELTSSSHGSDTRSFNDKTKNVHLERVEKIAS 103
>SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 25.0 bits (52), Expect = 9.2
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +3
Query: 462 VKDEESETKSNKSFSDKNEGKCVEYI 539
+ +EE NK+F +EGKC+ +
Sbjct: 347 ITNEEPLKNINKAFDHMHEGKCIRCV 372
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,310,188
Number of Sequences: 5004
Number of extensions: 41476
Number of successful extensions: 128
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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