Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24a23
         (638 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0357 + 14852584-14853058,14853116-14855754                       30   1.3  
01_01_0977 - 7717808-7717837,7718227-7718327,7718449-7718548,771...    29   3.1  
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132     29   4.1  
01_05_0612 - 23652121-23652400,23653031-23654427                       28   5.4  
05_03_0110 + 8500204-8500460,8502544-8502612,8502725-8502790,850...    28   7.2  

>04_03_0357 + 14852584-14853058,14853116-14855754
          Length = 1037

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 24/97 (24%), Positives = 44/97 (45%)
 Frame = +3

Query: 294  STCREKSIQTEDNLTVLSLAPIDSALVERINLMRRNISCPTCTVIMSLFRHSQTRVVKDE 473
            STC  + I+T     V++L+ I+   +ER+    +N       ++   F+    R+    
Sbjct: 815  STCLVELIETP--FLVVTLSEIEIVNLERVGFGTKNFDM---AIVFKDFKKDVLRIDSIP 869

Query: 474  ESETKSNKSFSDKNEGKCVEYIEKSTSFTSRPILKTI 584
             +   + K + D  +   ++Y E   +   RPILKTI
Sbjct: 870  STSLDAIKEWLDTTD---LKYYESRLNLNWRPILKTI 903


>01_01_0977 -
           7717808-7717837,7718227-7718327,7718449-7718548,
           7718706-7718822,7718913-7718990,7719980-7720058,
           7720184-7720249,7720373-7720441,7720890-7721188
          Length = 312

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -2

Query: 124 YIFNYSVEFCNKKIHNFFLNHYFTLESH-CIGTIFSLI 14
           Y  N      NKKI+N+F   YF    H  +G ++ L+
Sbjct: 124 YFLNVIFNILNKKIYNYFPYPYFVSVIHLLVGVVYCLV 161


>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
          Length = 5436

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +3

Query: 465  KDEESETKSNKSFSDKNEGKCVEYIEKSTSFTSRPILK 578
            K+ ES+ +SN    D     C EY++K T+FTS+   K
Sbjct: 3799 KNVESDIRSNADQKDIQILHC-EYVDKETNFTSKKFNK 3835


>01_05_0612 - 23652121-23652400,23653031-23654427
          Length = 558

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/73 (20%), Positives = 37/73 (50%)
 Frame = +3

Query: 300 CREKSIQTEDNLTVLSLAPIDSALVERINLMRRNISCPTCTVIMSLFRHSQTRVVKDEES 479
           CR   +  +DNL  +++A   ++  + I +     + P  + ++     ++ R   D +S
Sbjct: 38  CRVGDMSGDDNLGAITVAKGTTSTGDGITVAFSAAAPPAISRLLFALHPNKNRQTTDSDS 97

Query: 480 ETKSNKSFSDKNE 518
           ++ S+ S SD+++
Sbjct: 98  DSDSSDSDSDESD 110


>05_03_0110 +
           8500204-8500460,8502544-8502612,8502725-8502790,
           8502885-8502963,8504270-8504390,8504486-8504581,
           8505403-8505515,8505612-8505689,8507777-8507893,
           8508194-8508293,8508463-8508563,8509093-8509110
          Length = 404

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -2

Query: 124 YIFNYSVEFCNKKIHNFFLNHYFTLESH-CIGTIFSLI 14
           Y  N      NKKI ++F   YF   SH  +G ++ L+
Sbjct: 110 YFLNVIFNILNKKIFDYFPYPYFVSVSHLLVGVLYCLV 147


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,273,846
Number of Sequences: 37544
Number of extensions: 214778
Number of successful extensions: 476
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)