Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24a23
         (638 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006633-6|AAK68378.4|  578|Caenorhabditis elegans Hypothetical ...    29   2.1  
Z78019-6|CAB01453.2|  370|Caenorhabditis elegans Hypothetical pr...    28   4.9  
U64842-7|AAM29679.1|  112|Caenorhabditis elegans Hypothetical pr...    28   6.5  
U64842-6|AAM29678.1|  129|Caenorhabditis elegans Hypothetical pr...    28   6.5  

>AC006633-6|AAK68378.4|  578|Caenorhabditis elegans Hypothetical
           protein F35B3.7 protein.
          Length = 578

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 18/78 (23%), Positives = 34/78 (43%)
 Frame = +3

Query: 276 RNLNAISTCREKSIQTEDNLTVLSLAPIDSALVERINLMRRNISCPTCTVIMSLFRHSQT 455
           R   A+S+C  +++Q E    +     ++  L    N+  ++  CP C+V  ++      
Sbjct: 494 RQNTAMSSCM-RTVQEEKTRLMGKCIQLERELDNLHNVSLKSAGCPNCSVASNIEEKDLR 552

Query: 456 RVVKDEESETKSNKSFSD 509
           R V+D   E  + K   D
Sbjct: 553 REVQDLRQEVANLKQVVD 570


>Z78019-6|CAB01453.2|  370|Caenorhabditis elegans Hypothetical
           protein ZK863.1 protein.
          Length = 370

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/37 (32%), Positives = 24/37 (64%)
 Frame = +3

Query: 327 DNLTVLSLAPIDSALVERINLMRRNISCPTCTVIMSL 437
           DN+ ++S   ++SA   RIN ++R +   T T++++L
Sbjct: 233 DNMKIVSKLNLESAEKRRINAIKRCLISATLTLVLNL 269


>U64842-7|AAM29679.1|  112|Caenorhabditis elegans Hypothetical
           protein F25B4.8b protein.
          Length = 112

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +3

Query: 249 CECSVCEAARNLNA-ISTCREKSIQTEDNLTV 341
           C CSVC+  +N +  I   R K ++ ED +TV
Sbjct: 30  CNCSVCDKKQNQHCIIKLDRFKLLEGEDKITV 61


>U64842-6|AAM29678.1|  129|Caenorhabditis elegans Hypothetical
           protein F25B4.8a protein.
          Length = 129

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +3

Query: 249 CECSVCEAARNLNA-ISTCREKSIQTEDNLTV 341
           C CSVC+  +N +  I   R K ++ ED +TV
Sbjct: 30  CNCSVCDKKQNQHCIIKLDRFKLLEGEDKITV 61


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,766,155
Number of Sequences: 27780
Number of extensions: 234591
Number of successful extensions: 670
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)