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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24a21
         (659 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14433-6|AAA27974.2| 2107|Caenorhabditis elegans Hypothetical pr...    37   0.015
Z75532-2|CAA99812.1|  839|Caenorhabditis elegans Hypothetical pr...    33   0.18 
U00040-2|AAA50667.4|  366|Caenorhabditis elegans Hypothetical pr...    33   0.18 
AL117204-21|CAB55157.1|  712|Caenorhabditis elegans Hypothetical...    31   0.96 
Z80344-2|CAB02487.3|  608|Caenorhabditis elegans Hypothetical pr...    30   1.3  
U00043-4|AAN65291.1| 1076|Caenorhabditis elegans Hypothetical pr...    29   2.2  
AC024781-3|AAK39330.2| 2203|Caenorhabditis elegans Prion-like-(q...    29   2.2  
U23517-8|AAM98041.1|  605|Caenorhabditis elegans A kinase anchor...    29   2.9  
U23517-7|AAM98040.1| 1284|Caenorhabditis elegans A kinase anchor...    29   2.9  
U23517-6|AAB93340.1| 1280|Caenorhabditis elegans A kinase anchor...    29   2.9  
EF472000-1|ABQ96385.1| 1142|Caenorhabditis elegans SMG-3 protein.      29   2.9  
AF045926-1|AAC24507.1| 1280|Caenorhabditis elegans A kinase anch...    29   2.9  
AC084197-22|AAK68590.2| 1142|Caenorhabditis elegans Suppressor w...    29   2.9  
AC024817-16|AAF59585.2|  610|Caenorhabditis elegans Hypothetical...    29   2.9  
U53155-4|AAC48265.1|  619|Caenorhabditis elegans Hypothetical pr...    28   5.1  
U42436-12|AAF99901.1| 1206|Caenorhabditis elegans Guanylyl cycla...    28   5.1  
AB201388-1|BAE78828.1| 1152|Caenorhabditis elegans recepotor typ...    28   5.1  
Z49068-5|CAA88863.2|  707|Caenorhabditis elegans Hypothetical pr...    28   6.8  
AC024138-1|AAU05565.1|  319|Caenorhabditis elegans Hypothetical ...    28   6.8  
Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical pr...    27   8.9  
U29244-16|AAQ23126.1|  172|Caenorhabditis elegans Hypothetical p...    27   8.9  
AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein.      27   8.9  
AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP ...    27   8.9  

>L14433-6|AAA27974.2| 2107|Caenorhabditis elegans Hypothetical protein
            C50C3.2 protein.
          Length = 2107

 Score = 36.7 bits (81), Expect = 0.015
 Identities = 43/182 (23%), Positives = 70/182 (38%), Gaps = 10/182 (5%)
 Frame = +2

Query: 128  MQNEGEDDEQKIPQSATSPVTSNKISSEAASLTSKNH---EKVLTSTGNSLNESTKVSYV 298
            +QN  E+ E KI Q          I+     L S+N     K+ + +   L +S  ++  
Sbjct: 664  IQNSVENFEVKIHQKVDDTKKLLHITENMNELNSQNEWIRAKIKSLSAEPLWDSLLIAQK 723

Query: 299  NERRLQRDFMRSNYTNRPKNIPK--ETPDVKNMEKALLELLDDFHTGKLSAFGSGCSMEQ 472
              RR   DF      NR K I +  +       +  LLE+  ++   K      G  +E+
Sbjct: 724  MRRRHDNDF--EEIANRRKQITEVIQKSATTKDQPILLEIEQNWDRMKDLFDERGGVLER 781

Query: 473  MINIRDQQEHLARL-----HFRLCADVDKPTEDNFENSASRDKMEQLVKSLEQLSNSIER 637
            +I + +  E  +          +CAD  +P ED   N     K+E L + +E     I  
Sbjct: 782  IIKLYEYDEESSTTSEWLREKMICADTIEPKEDESFNEVMVKKLEALTEEVENYKPRIVE 841

Query: 638  LH 643
             H
Sbjct: 842  TH 843


>Z75532-2|CAA99812.1|  839|Caenorhabditis elegans Hypothetical
           protein C54G10.2 protein.
          Length = 839

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 1/104 (0%)
 Frame = +2

Query: 116 TQQLMQNEGEDDEQKIPQSATSPVTSNKISSEAASLTSKNHEKVL-TSTGNSLNESTKVS 292
           T+ ++  + +++E+  PQ  T+P  S K   E + +TS   E V  T          K  
Sbjct: 35  TKPVVLTDDDEEEENAPQKKTAPKRSRKQEKEESDITSDEDELVRGTDEKKKRKGGKKEL 94

Query: 293 YVNERRLQRDFMRSNYTNRPKNIPKETPDVKNMEKALLELLDDF 424
            V ++ L   F  S+ +++ ++ PK     K +EK L+   D F
Sbjct: 95  PVGQKTLDYMFKPSSSSSK-RDDPK-----KKVEKTLVNPADFF 132


>U00040-2|AAA50667.4|  366|Caenorhabditis elegans Hypothetical
           protein C18H2.2 protein.
          Length = 366

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 18/73 (24%), Positives = 38/73 (52%)
 Frame = +2

Query: 98  LEEANETQQLMQNEGEDDEQKIPQSATSPVTSNKISSEAASLTSKNHEKVLTSTGNSLNE 277
           + E  ++++L  +E  DDE + PQS  S +  + + +E ++L +   +++  S+  S + 
Sbjct: 180 ISEYTDSRRLRTSENSDDENEEPQSDYSNI--DNVENENSALVTSKDDELFESSMTSFDT 237

Query: 278 STKVSYVNERRLQ 316
           ST       +R Q
Sbjct: 238 STHSRSSGRKRTQ 250


>AL117204-21|CAB55157.1|  712|Caenorhabditis elegans Hypothetical
           protein Y116A8C.33 protein.
          Length = 712

 Score = 30.7 bits (66), Expect = 0.96
 Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 2/100 (2%)
 Frame = +2

Query: 110 NETQQLMQNEGEDDEQKIPQSATSPVTSNKISSEAASLTSKNHEKVLTSTGNSLNESTKV 289
           NE  Q++    + DE  I QS    V S  +  E      K HE + +S   +++++   
Sbjct: 567 NEMSQMLN---QTDEIGISQSVVQSVYS-LVDLEPLISQVKGHEDI-SSLETAISQAK-- 619

Query: 290 SYVNERRLQRDFMRSNYTNRPKNIPKETPDVK--NMEKAL 403
           +Y++   + R      YTN  KN+  E PD+    +EKAL
Sbjct: 620 AYISRIDVWRAKSLKGYTNPLKNLTAEIPDIDIIPIEKAL 659


>Z80344-2|CAB02487.3|  608|Caenorhabditis elegans Hypothetical
           protein F15D4.4 protein.
          Length = 608

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = +2

Query: 143 EDDEQKIPQS---ATSPVTSNKISSEAASLTSKNHEKVLTSTGNSLNESTKVS 292
           EDDE ++ +     TS  TS+  S+EA++ T+       TST ++   +T  S
Sbjct: 504 EDDEDEVDEEDKEETSTTTSSTTSTEASTPTTSTSTSTSTSTPSTTTSTTSTS 556


>U00043-4|AAN65291.1| 1076|Caenorhabditis elegans Hypothetical
           protein T26A5.5a protein.
          Length = 1076

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 30/121 (24%), Positives = 48/121 (39%)
 Frame = +2

Query: 101 EEANETQQLMQNEGEDDEQKIPQSATSPVTSNKISSEAASLTSKNHEKVLTSTGNSLNES 280
           EE +  +   Q E E+DE +  +   +PVT    S  +    +KN E    S      E 
Sbjct: 614 EEYDAEEPEDQEEEEEDEYQAEEYTPTPVTRRSSSRRSG---AKNDESEEVSVKKDKKEK 670

Query: 281 TKVSYVNERRLQRDFMRSNYTNRPKNIPKETPDVKNMEKALLELLDDFHTGKLSAFGSGC 460
            +       ++++D  R N  ++   I KE    K  E+  +EL         +A G G 
Sbjct: 671 ME-------KVEKDEKRRNSKSKKDKISKEK---KKKERERIELESQLDAELRAAHGGGS 720

Query: 461 S 463
           S
Sbjct: 721 S 721


>AC024781-3|AAK39330.2| 2203|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 85
           protein.
          Length = 2203

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 1/86 (1%)
 Frame = +2

Query: 155 QKIPQSATSPVTSNKISSEAASLTSKNHEKVLTSTGNSLNESTKVSYVNERRLQRDFMRS 334
           Q IPQ    P TSN+   +  S  S   +  + S+   L E        ER+ Q +  R 
Sbjct: 149 QPIPQHTIPPSTSNQFQQQIQSAASSIFDSSVISSHQKLYEEQCRQIEKERKEQEERKRK 208

Query: 335 NYTNRPKNIPKETPDVK-NMEKALLE 409
                 +   +E   ++   EK LLE
Sbjct: 209 QELEEQRKRNEELKRLRIAEEKRLLE 234


>U23517-8|AAM98041.1|  605|Caenorhabditis elegans A kinase anchor
           protein protein1, isoform c protein.
          Length = 605

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
 Frame = +2

Query: 137 EGEDDEQKIPQSATSPVTSN--KISSEAA-SLTSKNHEKVLTSTGNSLNESTKVSYVNER 307
           E ED E   P++A S    N  +   E + S  S N+E+VL +  +  +E T V  VNE 
Sbjct: 419 ETEDQETLSPETADSSTNKNSDEFPDEGSQSEASVNNEEVLENVEHVEDECTVVDAVNEN 478

Query: 308 RLQ--RDFMRSNYTNRPK 355
                 +    N  NRP+
Sbjct: 479 TDSSIEENDEENTENRPR 496


>U23517-7|AAM98040.1| 1284|Caenorhabditis elegans A kinase anchor
           protein protein1, isoform b protein.
          Length = 1284

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
 Frame = +2

Query: 137 EGEDDEQKIPQSATSPVTSN--KISSEAA-SLTSKNHEKVLTSTGNSLNESTKVSYVNER 307
           E ED E   P++A S    N  +   E + S  S N+E+VL +  +  +E T V  VNE 
Sbjct: 419 ETEDQETLSPETADSSTNKNSDEFPDEGSQSEASVNNEEVLENVEHVEDECTVVDAVNEN 478

Query: 308 RLQ--RDFMRSNYTNRPK 355
                 +    N  NRP+
Sbjct: 479 TDSSIEENDEENTENRPR 496


>U23517-6|AAB93340.1| 1280|Caenorhabditis elegans A kinase anchor
           protein protein1, isoform a protein.
          Length = 1280

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
 Frame = +2

Query: 137 EGEDDEQKIPQSATSPVTSN--KISSEAA-SLTSKNHEKVLTSTGNSLNESTKVSYVNER 307
           E ED E   P++A S    N  +   E + S  S N+E+VL +  +  +E T V  VNE 
Sbjct: 419 ETEDQETLSPETADSSTNKNSDEFPDEGSQSEASVNNEEVLENVEHVEDECTVVDAVNEN 478

Query: 308 RLQ--RDFMRSNYTNRPK 355
                 +    N  NRP+
Sbjct: 479 TDSSIEENDEENTENRPR 496


>EF472000-1|ABQ96385.1| 1142|Caenorhabditis elegans SMG-3 protein.
          Length = 1142

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 21/100 (21%), Positives = 44/100 (44%), Gaps = 3/100 (3%)
 Frame = +2

Query: 329  RSNYTNRPKNIPKETPDVKNMEKALLELLDDFHTGKLSAFGSGCSMEQMINIRDQQEHLA 508
            +SN    PKN+ +    V  +EK     L +F        G G +   +I   D+++   
Sbjct: 877  KSNSLRWPKNLKEAQDIVTKIEKKFKGELKEFAGEHKDIEGDGLNELNVIEEDDEEDEDE 936

Query: 509  RLHFRLCAD---VDKPTEDNFENSASRDKMEQLVKSLEQL 619
                 L  D    D+   +NF N+ ++++ ++  + L+++
Sbjct: 937  NRDSELDEDDSEEDRQKIENFSNAVTKEEDDEFQRELDRM 976


>AF045926-1|AAC24507.1| 1280|Caenorhabditis elegans A kinase anchor
           protein protein.
          Length = 1280

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
 Frame = +2

Query: 137 EGEDDEQKIPQSATSPVTSN--KISSEAA-SLTSKNHEKVLTSTGNSLNESTKVSYVNER 307
           E ED E   P++A S    N  +   E + S  S N+E+VL +  +  +E T V  VNE 
Sbjct: 419 ETEDQETLSPETADSSTNKNSDEFPDEGSQSEASVNNEEVLENVEHVEDECTVVDAVNEN 478

Query: 308 RLQ--RDFMRSNYTNRPK 355
                 +    N  NRP+
Sbjct: 479 TDSSIEENDEENTENRPR 496


>AC084197-22|AAK68590.2| 1142|Caenorhabditis elegans Suppressor with
            morphological effecton genitalia protein 3 protein.
          Length = 1142

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 21/100 (21%), Positives = 44/100 (44%), Gaps = 3/100 (3%)
 Frame = +2

Query: 329  RSNYTNRPKNIPKETPDVKNMEKALLELLDDFHTGKLSAFGSGCSMEQMINIRDQQEHLA 508
            +SN    PKN+ +    V  +EK     L +F        G G +   +I   D+++   
Sbjct: 877  KSNSLRWPKNLKEAQDIVTKIEKKFKGELKEFAGEHKDIEGDGLNELNVIEEDDEEDEDE 936

Query: 509  RLHFRLCAD---VDKPTEDNFENSASRDKMEQLVKSLEQL 619
                 L  D    D+   +NF N+ ++++ ++  + L+++
Sbjct: 937  NRDSELDEDDSEEDRQKIENFSNAVTKEEDDEFQRELDRM 976


>AC024817-16|AAF59585.2|  610|Caenorhabditis elegans Hypothetical
           protein Y54G2A.13 protein.
          Length = 610

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = +2

Query: 110 NETQQLMQNEGEDDEQKIPQSATSPVTSNKISSEAASLTSKNHEKVLTSTGNSLNESTKV 289
           N T    +NE  D+    PQSA +PVT+   S +    T    E  L  T  +  ++T+ 
Sbjct: 259 NPTTSNQKNETTDEATSSPQSAKTPVTNPTTSPQKPDTT----EAALPLTTATTTKATQT 314

Query: 290 SY 295
           S+
Sbjct: 315 SH 316


>U53155-4|AAC48265.1|  619|Caenorhabditis elegans Hypothetical
           protein ZC513.3 protein.
          Length = 619

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +2

Query: 131 QNEGEDDEQKIPQSATSPVTSNKISSEAASLTSKNHEKVLTSTG 262
           Q+  + D   + QSATS +   +I+    +L SKN  K++ + G
Sbjct: 498 QSSEKSDAPSVAQSATSYLFQQRITFLEKTLPSKNDTKIVLTPG 541


>U42436-12|AAF99901.1| 1206|Caenorhabditis elegans Guanylyl cyclase
           protein 8 protein.
          Length = 1206

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 27/132 (20%), Positives = 58/132 (43%), Gaps = 6/132 (4%)
 Frame = +2

Query: 92  LHLEEANETQQLMQNEGEDDEQKIPQSATSPVTSNKISSEAASLTSKNHEKVLTSTGN-- 265
           ++L    ET++++ N G +D +       SP T+    S + +    +  ++  + G+  
Sbjct: 16  IYLAACQETERILANNGTEDNEITTSKGVSPNTNPLFLSNSTAGLYDSKGRIRLTIGHIG 75

Query: 266 ---SLNESTKVSYVNERRLQRDFMRSNYTNRPKNIPKETPDVKNMEKALLELLDDFHTGK 436
              +L    K+  V+ + LQ + +  +  +    I  +T   ++ E  +    D +H  K
Sbjct: 76  AIGALRNDVKILEVSHKALQAEGILDD--DLDVEIISQTGCGESYE-GVAVAADMYHLQK 132

Query: 437 LSAF-GSGCSME 469
           + AF G  C+ E
Sbjct: 133 VKAFIGPYCNAE 144


>AB201388-1|BAE78828.1| 1152|Caenorhabditis elegans recepotor type
           guanyly cyclase protein.
          Length = 1152

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 27/132 (20%), Positives = 58/132 (43%), Gaps = 6/132 (4%)
 Frame = +2

Query: 92  LHLEEANETQQLMQNEGEDDEQKIPQSATSPVTSNKISSEAASLTSKNHEKVLTSTGN-- 265
           ++L    ET++++ N G +D +       SP T+    S + +    +  ++  + G+  
Sbjct: 16  IYLAACQETERILANNGTEDNEITTSKGVSPNTNPLFLSNSTAGLYDSKGRIRLTIGHIG 75

Query: 266 ---SLNESTKVSYVNERRLQRDFMRSNYTNRPKNIPKETPDVKNMEKALLELLDDFHTGK 436
              +L    K+  V+ + LQ + +  +  +    I  +T   ++ E  +    D +H  K
Sbjct: 76  AIGALRNDVKILEVSHKALQAEGILDD--DLDVEIISQTGCGESYE-GVAVAADMYHLQK 132

Query: 437 LSAF-GSGCSME 469
           + AF G  C+ E
Sbjct: 133 VKAFIGPYCNAE 144


>Z49068-5|CAA88863.2|  707|Caenorhabditis elegans Hypothetical
           protein K01C8.5 protein.
          Length = 707

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = +2

Query: 101 EEANETQQLMQNEGEDDEQKIPQSATSPVTSNKI-SSEAASLTSKNHEKVLTSTGNSLNE 277
           EE  E +   +       QK P       T +++   E +S   + HEK  +S  ++++ 
Sbjct: 270 EEEEEEEIYNKQTKRRRSQKTPIQHNKNRTESRLHQKEKSSSDEEVHEKSTSSRHSNVSR 329

Query: 278 STKVSYVNERR 310
           S+K  Y+N+ R
Sbjct: 330 SSKSPYLNDDR 340


>AC024138-1|AAU05565.1|  319|Caenorhabditis elegans Hypothetical
           protein H08J11.2 protein.
          Length = 319

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 21/95 (22%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
 Frame = +2

Query: 122 QLMQNEGEDDEQKIPQSATSPVTSNKISSEAASLTSKNHEKVLTSTGNSLNESTKVSYVN 301
           ++ Q+  EDD   + +       SN  +S+ ++ T +  E+++ +TG S + + K+  V 
Sbjct: 130 EITQSASEDDRLDLLKELAKIGKSNTSTSQMSTTTPEKPEEIIDATGTS-DTAEKIEVVI 188

Query: 302 ERRLQRDFMRSNYTNRP--KNIPKETPDVKNMEKA 400
            +  +    + N    P    +P E+ D    E A
Sbjct: 189 SK--EEPAEQKNEVEEPDYAQVPAESEDDAAQELA 221


>Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical protein
            C05C12.3 protein.
          Length = 1694

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 17/76 (22%), Positives = 31/76 (40%)
 Frame = +2

Query: 143  EDDEQKIPQSATSPVTSNKISSEAASLTSKNHEKVLTSTGNSLNESTKVSYVNERRLQRD 322
            +DDEQ+  Q   + +  N+     +   + NH+ +       L+  T+     E    R+
Sbjct: 996  DDDEQE--QKKATEMYINRTGKRGSVAVAMNHDDMYIDPSEELDTQTRQKSSREFSSSRN 1053

Query: 323  FMRSNYTNRPKNIPKE 370
                 YT RP +  K+
Sbjct: 1054 VTVQVYTQRPLSWKKK 1069


>U29244-16|AAQ23126.1|  172|Caenorhabditis elegans Hypothetical
           protein ZK1248.19 protein.
          Length = 172

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 16/53 (30%), Positives = 29/53 (54%)
 Frame = +2

Query: 482 IRDQQEHLARLHFRLCADVDKPTEDNFENSASRDKMEQLVKSLEQLSNSIERL 640
           I++ Q+ + RL  R  A++++  E+N E    R+  E  V  L++    +ERL
Sbjct: 8   IKNAQKTIDRL-IRQLAEIEQE-ENNLEEDEYRELREDTVNQLQEYGKIVERL 58


>AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein.
          Length = 1694

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 17/76 (22%), Positives = 31/76 (40%)
 Frame = +2

Query: 143  EDDEQKIPQSATSPVTSNKISSEAASLTSKNHEKVLTSTGNSLNESTKVSYVNERRLQRD 322
            +DDEQ+  Q   + +  N+     +   + NH+ +       L+  T+     E    R+
Sbjct: 996  DDDEQE--QKKATEMYINRTGKRGSVAVAMNHDDMYIDPSEELDTQTRQKSSREFSSSRN 1053

Query: 323  FMRSNYTNRPKNIPKE 370
                 YT RP +  K+
Sbjct: 1054 VTVQVYTQRPLSWKKK 1069


>AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP
            homologous cationchannel protein.
          Length = 1681

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 17/76 (22%), Positives = 31/76 (40%)
 Frame = +2

Query: 143  EDDEQKIPQSATSPVTSNKISSEAASLTSKNHEKVLTSTGNSLNESTKVSYVNERRLQRD 322
            +DDEQ+  Q   + +  N+     +   + NH+ +       L+  T+     E    R+
Sbjct: 983  DDDEQE--QKKATEMYINRTGKRGSVAVAMNHDDMYIDPSEELDTQTRQKSSREFSSSRN 1040

Query: 323  FMRSNYTNRPKNIPKE 370
                 YT RP +  K+
Sbjct: 1041 VTVQVYTQRPLSWKKK 1056


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,908,162
Number of Sequences: 27780
Number of extensions: 278061
Number of successful extensions: 1024
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1023
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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