Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24a19
         (615 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    28   0.93 
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    28   1.2  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    27   1.6  
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    27   1.6  
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    26   3.8  
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.0  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   5.0  
SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine l...    25   6.6  

>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 17/26 (65%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
 Frame = +1

Query: 514 KTLTPKSST-SYGATTPFFSVSSKNT 588
           KTLT + ST SYG T PFFS+SS  T
Sbjct: 96  KTLTNELSTWSYGLT-PFFSISSIKT 120


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
 Frame = +1

Query: 445 SMISTPWSSETWDSAVFNSANSEK----TLTPKSSTSYGATTPFFSVSSKNTLTLLESAV 612
           S  S+P SS +  S+  +S +S      T + KSS+S+ +T    S +S +TLT   S+ 
Sbjct: 331 SFSSSPTSSSSTISSSSSSPSSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSS 390

Query: 613 S 615
           S
Sbjct: 391 S 391


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 16/47 (34%), Positives = 28/47 (59%)
 Frame = +1

Query: 454 STPWSSETWDSAVFNSANSEKTLTPKSSTSYGATTPFFSVSSKNTLT 594
           STP SS    +A  +++++  T    ++T+  ++TP  SVSS N+ T
Sbjct: 289 STPLSSANSTTAT-SASSTPLTSVNSTTTTSASSTPLSSVSSANSTT 334



 Score = 25.0 bits (52), Expect = 8.7
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +1

Query: 445 SMISTPWSSETWDSAVFNSANSEKTLTPKSSTSYGATTPFFSVSS 579
           S  STP +S    SA   S+    +    +STS  +T P ++ SS
Sbjct: 369 SASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSSTAPSYNTSS 413



 Score = 25.0 bits (52), Expect = 8.7
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +1

Query: 445 SMISTPWSSETWDSAVFNSANSEKTLTPKSSTSYGATTPFFSVSS 579
           S  STP +S    SA   S+    +    +STS  +T P ++ SS
Sbjct: 483 SASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSSTAPSYNTSS 527


>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 18/57 (31%), Positives = 34/57 (59%)
 Frame = +1

Query: 445 SMISTPWSSETWDSAVFNSANSEKTLTPKSSTSYGATTPFFSVSSKNTLTLLESAVS 615
           S  STP SS +  S+  +S++S+ + + KSS+S  +++   S SS ++ +   S+ S
Sbjct: 149 SSSSTPSSSSSSSSSSPSSSSSKSSSSSKSSSSSSSSSKSSSSSSSSSKSSSSSSSS 205


>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 499 SANSEKTLTPKSSTSYGATTPFFSVSSKNTLT 594
           S  S  + T  +S+SY  TTP FS+     +T
Sbjct: 532 SPPSPSSSTKSASSSYSTTTPAFSIGPLTPMT 563


>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 22/93 (23%), Positives = 36/93 (38%), Gaps = 2/93 (2%)
 Frame = +2

Query: 212 PLLSYFNDVCNPHSELKWY*EGDTAKSSAVRPLPYRNTSAK*PLTRVQNRKHLKARLHLT 391
           PLL  FND   P +           K S +     R+ ++   LT +  +   +  LH  
Sbjct: 168 PLLKSFNDSAIPENAANLSSSSKNMKDSTLSSQKARSNTSSSFLTPLHEQLESRCALHTA 227

Query: 392 RRTPANLK--LRL*QRKTP*A*SVLLGAVKRGT 484
            + P   K  LR  +  +P +   +L A+   T
Sbjct: 228 AKDPFRSKNSLRCNRGHSPLSSQQILPAISNNT 260


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = +1

Query: 454  STPWSSETW--DSAVFNSANSEKTLTP-KSSTSYGATTPFFSVSSKNTLTLLESA 609
            STP +S T    S    S+    T TP  SST   ++TP  S ++ NT T + S+
Sbjct: 2265 STPITSSTVVNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSS 2319


>SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine
           ligase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 788

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = +3

Query: 426 NNGRHLEHDQYSLEQ*NVGLCRFQQ-CKFREDANTEIFHVLWSYDTVL*RQQQKHFDVIR 602
           N G      +  +E  N+G+C F+Q  KF  D +  +  V+   +  L    + HF  + 
Sbjct: 37  NGGTASNGAESKMENVNIGVCDFEQLVKFALDKDVNL--VIPGPELPLVEGIEGHFRRVG 94

Query: 603 ISCF 614
           I CF
Sbjct: 95  IPCF 98


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,268,859
Number of Sequences: 5004
Number of extensions: 43065
Number of successful extensions: 126
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)