Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24a19
         (615 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0247 + 16030543-16031324,16032812-16033088,16033374-160335...    29   2.9  
03_02_0531 - 9240635-9240957,9241742-9241865,9241961-9242103,924...    29   3.9  
02_03_0172 + 15965342-15965711,15967757-15967849,15967976-159680...    29   3.9  

>09_04_0247 +
           16030543-16031324,16032812-16033088,16033374-16033559,
           16033714-16033866,16034277-16034702,16035922-16037668,
           16037687-16038183,16038519-16038709,16038786-16038941,
           16040077-16040311,16040416-16040723,16041279-16041439,
           16041852-16041895,16041975-16042067
          Length = 1751

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = +2

Query: 458 LLGAVKRGTLPFSTVQIQRRR*HRNLPRPMELRHRSLA 571
           LL A    T P    + QRRR HR+ PRP      SL+
Sbjct: 13  LLPAAAAATFPLILRRRQRRRHHRHRPRPCPTLRASLS 50


>03_02_0531 -
           9240635-9240957,9241742-9241865,9241961-9242103,
           9242205-9242340,9242468-9242796,9243236-9243305
          Length = 374

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = +3

Query: 264 GTKKEIQQRVRP*GHSHTEILQRNNL*REFRIGNI 368
           GTK      V P   S TEILQ +NL R+F  G +
Sbjct: 41  GTKASASSSVPPTPRSETEILQSSNL-RKFTFGEL 74


>02_03_0172 +
           15965342-15965711,15967757-15967849,15967976-15968060,
           15968749-15968824,15968992-15969120,15969473-15969571,
           15969661-15969762,15970257-15970415,15970507-15970602,
           15971497-15971647,15971782-15971893,15972004-15972074,
           15972548-15972984,15973421-15973492,15973713-15973810,
           15974350-15974425,15975512-15975634,15975776-15975844
          Length = 805

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = +1

Query: 496 NSANSEKTLTPKSSTSYGATTPFFSVSSKNTLTLLESA 609
           N ++++ + TP  STS+   TP  S  ++NTL L+ S+
Sbjct: 609 NDSDAQTSGTPSRSTSHILKTPEKSCHNENTLPLIPSS 646


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,544,285
Number of Sequences: 37544
Number of extensions: 242650
Number of successful extensions: 420
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 420
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)