Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24a17
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC323.07c |||MatE family transporter|Schizosaccharomyces pombe...    27   1.6  
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo...    26   4.8  
SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy...    25   8.4  

>SPAC323.07c |||MatE family transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -2

Query: 270 LIISMNHLPILCRWLGSNLVYILLIEFPIVQRYLFGRF 157
           LI+++ H+P+   WL    + I L + P+V  +L GR+
Sbjct: 177 LILAVLHIPVALIWLNLEHILIFLHQDPMV-AHLCGRY 213


>SPBC13G1.08c |ash2||Ash2-trithorax family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -1

Query: 286 VPLLPVNNFNEPSSNFMSVARIKFGIYSFNRVSNC 182
           VP LP+   N  S NF S++ I F    F R S C
Sbjct: 296 VPKLPIFYPNSSSPNFFSLSEIPFNRRGF-RYSPC 329


>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 523

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 453 KRCLFGRYYPSSDGRLLEYDIDEVVFDQESPF 548
           +RCL+G    +    LL YDI + + D+  P+
Sbjct: 120 ERCLYGALNDNIRRMLLSYDITKAI-DESQPY 150


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,309,294
Number of Sequences: 5004
Number of extensions: 45997
Number of successful extensions: 128
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)