Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte24a17
(598 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0818 + 7524549-7524747,7524855-7525863,7525964-7526108,752... 31 0.92
09_02_0203 - 5746068-5746307,5746469-5746729,5746833-5748239,574... 31 0.92
03_02_0961 + 12759701-12760054,12760294-12760420,12760719-127611... 29 3.7
01_01_0062 + 497728-497922,499444-499481,499576-499598,501156-50... 29 3.7
07_03_1555 - 27669981-27670148,27670232-27670315,27670349-276703... 28 4.9
06_03_0297 + 19267491-19267677,19267799-19267843,19268466-192685... 28 4.9
01_07_0112 - 41149461-41151674,41151688-41153265,41154344-411555... 28 4.9
05_07_0308 + 29115892-29116083,29116771-29116885,29116978-291170... 28 6.5
01_07_0111 - 41137822-41138973,41139453-41139540,41139850-411399... 27 8.6
>12_01_0818 +
7524549-7524747,7524855-7525863,7525964-7526108,
7526206-7526295,7526404-7526553,7527333-7528094,
7528177-7528496,7528581-7528707,7528792-7528959,
7529054-7530466,7530563-7530823,7530983-7531144,
7531976-7532121,7532601-7532667,7533483-7533587
Length = 1707
Score = 30.7 bits (66), Expect = 0.92
Identities = 17/39 (43%), Positives = 20/39 (51%)
Frame = +1
Query: 463 CLVDIILVQMDVSSNMILMKLYLIKNLHSKEFKLFILSH 579
C D ILV+ VS N +L LIK S F+ FI H
Sbjct: 467 CKPDAILVEKAVSRNNVLATPNLIKQCESLHFEKFIEEH 505
>09_02_0203 -
5746068-5746307,5746469-5746729,5746833-5748239,
5748588-5748714,5748800-5749119,5749202-5749963,
5750749-5750898,5751007-5751096,5751196-5751340,
5751440-5751617,5751753-5752448,5752555-5752753
Length = 1524
Score = 30.7 bits (66), Expect = 0.92
Identities = 17/39 (43%), Positives = 20/39 (51%)
Frame = +1
Query: 463 CLVDIILVQMDVSSNMILMKLYLIKNLHSKEFKLFILSH 579
C D ILV+ VS N +L LIK S F+ FI H
Sbjct: 422 CKPDAILVEKAVSRNNVLATPNLIKQCESLHFEKFIEEH 460
>03_02_0961 +
12759701-12760054,12760294-12760420,12760719-12761167,
12761369-12761590,12761672-12761980,12762092-12762430,
12762504-12762584,12762661-12762756,12762846-12763220,
12763400-12763531,12763962-12764132
Length = 884
Score = 28.7 bits (61), Expect = 3.7
Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 1/99 (1%)
Frame = +3
Query: 105 VHNILLDFSIEAARLEDENGQKDIFGQLETLLKEYIPNLILATDI-KLEDGSLKLLTGNK 281
VH I D I A L+D+ Q D+F + ++K P ++ L D S K +K
Sbjct: 576 VHKID-DVQIGTALLDDDEPQDDLFKSFDDIIKN--PGRKTTVEVGMLADNSWKKFKSSK 632
Query: 282 GTTVSVRMFDRGFITLNIEFYKGGNEESVIDHKTAKELE 398
G S D T+ + Y + +DH + + E
Sbjct: 633 GNDGSNTNGDIDKSTVKVS-YMADQKLKQLDHNSDSDSE 670
>01_01_0062 +
497728-497922,499444-499481,499576-499598,501156-501262,
501356-501407,501475-501559,501910-502000,502251-502289,
502383-502455,503285-503344,503439-503512,503606-503698,
503779-503880,504048-504128,504352-504426,504486-504614,
504705-504809
Length = 473
Score = 28.7 bits (61), Expect = 3.7
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = +1
Query: 373 ITRLPKNLKAKLKNIFLV*SHKHIFH*RDVCLVDIILVQMDVSSNMILMKLYLIKNLHS- 549
I R+ + K N + V K + H +++ DI+ Q D+S + +L+ L I + S
Sbjct: 334 IQRIRRRELYKFCNEYSVPKDK-LEHFKNITAQDIVCSQGDISDSDLLLLLVCISTIPSI 392
Query: 550 KEFKLFILS 576
K FK F+LS
Sbjct: 393 KFFKEFLLS 401
>07_03_1555 -
27669981-27670148,27670232-27670315,27670349-27670360,
27670683-27670761,27670840-27671078,27671167-27671260,
27671342-27671484,27671688-27671786,27671870-27671998,
27672123-27672197,27672308-27672520,27672581-27672676,
27673282-27673380,27673600-27673839,27674212-27674322,
27674429-27674626,27674720-27674835,27675076-27675193,
27675761-27675866,27675972-27676030,27676259-27676388,
27676730-27676887,27677672-27677887,27677972-27678082,
27678313-27678472,27679364-27679509,27679603-27679695,
27680610-27680706,27681224-27681294,27681407-27681505,
27682037-27682168,27682287-27682729,27683252-27683564,
27684301-27684549
Length = 1631
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
Frame = -2
Query: 405 FCFQVLW--QSCDRSRTPHFRPCK 340
FC W Q+CD PH RPC+
Sbjct: 879 FCGMEFWAAQACDPGFDPHLRPCE 902
>06_03_0297 +
19267491-19267677,19267799-19267843,19268466-19268542,
19268652-19268774,19269029-19269133,19269217-19269289,
19269588-19269690,19269890-19270144,19270996-19271125,
19271278-19271352,19271470-19271550
Length = 417
Score = 28.3 bits (60), Expect = 4.9
Identities = 10/39 (25%), Positives = 21/39 (53%)
Frame = +3
Query: 480 PSSDGRLLEYDIDEVVFDQESPFQRVQIVHSKSLGNMLV 596
P G ++ +++ +SP+Q + + S + GN+LV
Sbjct: 74 PMWPGEAHSLKVENILYQGKSPYQEILVFESSTYGNVLV 112
>01_07_0112 - 41149461-41151674,41151688-41153265,41154344-41155507,
41155807-41156293,41156603-41156759,41157303-41157378
Length = 1891
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -1
Query: 202 FNRVSNCPKISFWPFSSSRRAASIEKSNKIL 110
F + +CPK+SF P+ S++ S+K+L
Sbjct: 1254 FLKAVDCPKLSFLPYPPRSMHWSLDNSDKVL 1284
>05_07_0308 +
29115892-29116083,29116771-29116885,29116978-29117087,
29118225-29118350,29118450-29118570,29118665-29118749,
29118854-29118967,29119061-29119100,29119517-29119665,
29120223-29120412,29121674-29122228,29123588-29123815,
29123904-29124044,29124134-29124334,29124447-29124728
Length = 882
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -2
Query: 294 IQSFLYYRLIISMNHLPILCRWLGSNLVYILLIEFPIVQRY 172
IQ+F+Y++++ M H P+ + S I I P + RY
Sbjct: 294 IQTFMYWQVLKQMYHAPVTASYHQSAWAKIGRIVNPYIHRY 334
>01_07_0111 - 41137822-41138973,41139453-41139540,41139850-41139969,
41140165-41140211,41140796-41141029,41141305-41141505,
41141506-41143407,41144140-41145303,41145574-41145879
Length = 1737
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -1
Query: 196 RVSNCPKISFWPFSSSRRAASIEKSNKIL 110
+V NCPK+SF P+ ++ S+++L
Sbjct: 1124 KVDNCPKLSFLPYPPRSMNWYLDSSDEVL 1152
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,625,277
Number of Sequences: 37544
Number of extensions: 247559
Number of successful extensions: 729
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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