Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24a17
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21324-9|AAA62560.2|  755|Caenorhabditis elegans Coenzyme q (ubi...    35   0.038
U40953-5|AAB52648.1|  385|Caenorhabditis elegans G protein, alph...    29   3.3  
AY008128-1|AAG32081.1|  385|Caenorhabditis elegans heterotrimeri...    29   3.3  

>U21324-9|AAA62560.2|  755|Caenorhabditis elegans Coenzyme q
           (ubiquinone) biosynthesisprotein 8 protein.
          Length = 755

 Score = 35.1 bits (77), Expect = 0.038
 Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
 Frame = +3

Query: 123 DFSIEAAR-LEDENGQKDIFGQLETLLKEYIPNLILATDIKLEDGSLKLLTGNKGTTVSV 299
           +F I+AAR ++D+N +  IFG  +   K Y P L    ++ LE G++  LT +  ++V  
Sbjct: 249 EFLIKAARSVDDDNAETAIFGTQKAKPKVYRPELPKNFEVNLEMGNVHTLTRSNESSVPA 308

Query: 300 RMFDR 314
               R
Sbjct: 309 TRIGR 313


>U40953-5|AAB52648.1|  385|Caenorhabditis elegans G protein, alpha
           subunit protein 5 protein.
          Length = 385

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +3

Query: 57  DYTVTKQNLIH--HCKMSVHNILLDFSIEAARLEDENGQK 170
           +Y  T ++LIH     + VH I  D++    RL D  GQK
Sbjct: 165 NYVPTAEDLIHMRQTTLGVHEISFDYTKHIIRLIDVGGQK 204


>AY008128-1|AAG32081.1|  385|Caenorhabditis elegans heterotrimeric G
           protein alphasubunit protein.
          Length = 385

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +3

Query: 57  DYTVTKQNLIH--HCKMSVHNILLDFSIEAARLEDENGQK 170
           +Y  T ++LIH     + VH I  D++    RL D  GQK
Sbjct: 165 NYVPTAEDLIHMRQTTLGVHEISFDYTKHIIRLIDVGGQK 204


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,452,982
Number of Sequences: 27780
Number of extensions: 242442
Number of successful extensions: 566
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)