Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24a15
         (655 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1658 - 35119623-35119754,35121033-35121121,35121205-351215...    30   1.9  
01_07_0229 + 42161770-42164562                                         30   1.9  
09_04_0246 - 16024454-16024529,16024635-16024720,16024805-160248...    28   7.5  
12_01_0531 + 4194403-4194417,4194776-4194850,4195136-4195237,419...    27   9.9  
08_02_1417 - 26922775-26922986,26923102-26923291,26923816-269239...    27   9.9  
05_01_0078 - 523366-525196,525622-525675,527135-529341                 27   9.9  

>04_04_1658 -
           35119623-35119754,35121033-35121121,35121205-35121599,
           35122009-35122091,35122163-35124184,35124859-35124927,
           35125050-35125130,35125215-35125308,35125435-35125499,
           35125961-35126038,35126115-35126360
          Length = 1117

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +2

Query: 470 YLCSVAVIGKSAEGRDIKILKVSNGNEYNVGVW 568
           Y C V ++G++ E R+ K L +S   E  VGVW
Sbjct: 670 YACMVDLLGRAGELREAKELILSMPMEPTVGVW 702


>01_07_0229 + 42161770-42164562
          Length = 930

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 26/110 (23%), Positives = 52/110 (47%), Gaps = 9/110 (8%)
 Frame = +2

Query: 176 FVKSLDTHGAITIWKEENSTMDIMVDGPRITQIAGMLHEREIPYSIAIGDVGSVLSREQ- 352
           F++ LD   A  ++KE+ +T +++    RI  +A  + E      +A+  +G  +S ++ 
Sbjct: 270 FMECLDQEKAWRLFKEK-ATEEVISSDVRIESLAKEVAEECGGLPLALATLGRAMSTKRT 328

Query: 353 ------GIKYSKNNRKPNYCEMD--WHNYHRLHVIYAFMENLSHEYPYLC 478
                  + Y K +R      M    H Y RL + Y ++++   +Y +LC
Sbjct: 329 RHEWALALSYLKKSRIHEIPNMGNTSHIYTRLKLSYDYLQDKQIKYCFLC 378


>09_04_0246 -
           16024454-16024529,16024635-16024720,16024805-16024894,
           16025349-16025435,16026112-16026229,16026852-16026982,
           16027619-16027909,16028000-16028124,16028209-16028334,
           16028452-16028487,16028599-16028902
          Length = 489

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = +2

Query: 437 AFMENLSHEYPYLCSVAV--IGKSAEGRDIKI 526
           A +E + HE+P +C V V  +  SAE  +IK+
Sbjct: 358 ASLEKICHEFPKVCGVIVEKVEPSAEHSEIKV 389


>12_01_0531 +
           4194403-4194417,4194776-4194850,4195136-4195237,
           4195453-4195584,4196137-4196193,4196314-4196565,
           4196664-4196845,4197244-4197544
          Length = 371

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -1

Query: 298 LPFVKHTGYLCDSRSIHHYIHCAIFFFPDCY 206
           L F++ TG    ++++  Y H  +F FP C+
Sbjct: 74  LIFIEGTGPTYATQTVMIYAHSLLFLFPQCF 104


>08_02_1417 -
           26922775-26922986,26923102-26923291,26923816-26923928,
           26924032-26924112,26925329-26926661
          Length = 642

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +2

Query: 395 EMDWHNYHRLHVIYAFMENLSHEYPYLCSVAVIGKS 502
           E  +H++HR+  +Y  +  + H   Y C V ++G++
Sbjct: 328 EQGYHHFHRMSKVYNLVPRIEH---YGCMVDLLGRA 360


>05_01_0078 - 523366-525196,525622-525675,527135-529341
          Length = 1363

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -3

Query: 518 YLVLQQIFQ*RPPSTNK-GIHVTNSP*TRKLHEDDDSYANPFHNS 387
           Y +L Q++   PPS N+  +H  N P T       ++Y N +H+S
Sbjct: 127 YDILGQVY---PPSLNRLALHSANEPDTPDESSSRNNYHNRYHSS 168


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,644,934
Number of Sequences: 37544
Number of extensions: 339330
Number of successful extensions: 735
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)