Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24a14
         (629 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0451 + 3194919-3195416,3195560-3195580,3196282-3196467,319...    28   7.0  
02_01_0087 + 623174-623421,623576-623693,624266-624588,625267-62...    27   9.3  

>06_01_0451 +
           3194919-3195416,3195560-3195580,3196282-3196467,
           3197272-3197556
          Length = 329

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = -3

Query: 453 ISSEKKIILGYVCYVVVVTFFNFMAW 376
           +S   +I+LG++C+V++ T F  + W
Sbjct: 128 LSRRCQIVLGFLCFVLLFTVFCLIIW 153


>02_01_0087 +
           623174-623421,623576-623693,624266-624588,625267-625551,
           625643-625823,625964-626119
          Length = 436

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +3

Query: 450 IFCLSCNVKNSVDTN*DLTNLY 515
           +FC++C + NS++T   +T LY
Sbjct: 133 LFCITCTLSNSMETVLTITGLY 154


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,741,511
Number of Sequences: 37544
Number of extensions: 148412
Number of successful extensions: 226
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)