Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24a13
         (247 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha...    25   1.8  
SPCC191.04c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual        24   2.4  
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb...    24   2.4  
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy...    24   3.2  
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    23   4.3  
SPAC15A10.06 |||CPA1 sodium ion/proton antiporter|Schizosaccharo...    23   5.6  
SPAC23H3.03c |||nitrogen permease regulator family|Schizosacchar...    23   5.6  
SPCC126.10 |iah1||isoamyl acetate hydrolytic enzyme Iah1 |Schizo...    23   7.4  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    23   7.4  
SPAC20H4.08 |||phosphatase activator |Schizosaccharomyces pombe|...    23   7.4  
SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb...    22   9.8  
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    22   9.8  
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    22   9.8  
SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyc...    22   9.8  

>SPAPJ696.02 |||actin cortical patch component Lsb4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 18/45 (40%), Positives = 23/45 (51%)
 Frame = +3

Query: 60  RRLKCRDTLPSELQRTSLQENGDEKPIFSS*TEKTHSKLFSSGSS 194
           RR K  DT PS  +  S  +  DE+ ++SS      S  FSS SS
Sbjct: 309 RRSKYADT-PSPRRSRSYSDE-DEESVYSSDVSTESSSQFSSRSS 351


>SPCC191.04c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 100

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 15/28 (53%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = -2

Query: 201 F*SYFH*KTILSVFFPFNLK-ILAFHRR 121
           F SYFH    LS  FPF     LAF RR
Sbjct: 26  FHSYFHIPDFLSFVFPFVASPPLAFARR 53


>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1379

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +1

Query: 103  EPLYRKTAMKSQYFQVKRK--KHTQNCFLVEVASKLH*NNMT 222
            E L +KT  K  +F+ K+K  KH +  F     +K++   MT
Sbjct: 1337 EKLQKKTDNKKPFFKKKKKKRKHLKKFFDFNTTAKVNEGAMT 1378


>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1010

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +3

Query: 141 FSS*TEKTHSKLFSSGSSFKITLK*Y-DIL 227
           FS+ TE++   + SS SS K+T+  Y D+L
Sbjct: 308 FSNSTERSAQNISSSISSLKLTMSTYQDVL 337


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 23.4 bits (48), Expect = 4.3
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = -2

Query: 144 KILAFHRRFPVKRFFEVRKVMCPYISDGANVVALTNPRSHIK 19
           ++L+ +  FP+ +   + + +C ++S  ANV       SH K
Sbjct: 284 ELLSHNEYFPMMKRGFISRFLCLFVSRDANVYIGPLESSHAK 325


>SPAC15A10.06 |||CPA1 sodium ion/proton
           antiporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 220 SYYFNVILKLLPLENNFECVFSV*LENIG 134
           +Y+FNV+L  + L + +E   S    NIG
Sbjct: 96  TYFFNVLLPPIILNSGYELHQSNFFRNIG 124


>SPAC23H3.03c |||nitrogen permease regulator
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -1

Query: 244 FFS*INKMSYYFNVILKLLPLENNF-ECVFSV 152
           + S +NK    F+VI ++L   NNF EC+  +
Sbjct: 138 YISDLNKRPVIFSVIEQILEDMNNFCECMIQL 169


>SPCC126.10 |iah1||isoamyl acetate hydrolytic enzyme Iah1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 246

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 84  MCPYISDGANVVALTNPRSHIKTL 13
           MCP      N++ALT P  H K +
Sbjct: 118 MCPVDEFKNNLLALTRPFPHSKII 141


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
           Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = -1

Query: 229 NKMSYYFNVILKLLPLENNF 170
           +K+S+Y +V+ +  P+E+ F
Sbjct: 680 DKLSHYISVVTQQSPIESRF 699


>SPAC20H4.08 |||phosphatase activator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 270

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
 Frame = -2

Query: 177 TILSVFFPFNLKILAFHRRFPVKRFFEVRKV---MCPYISD 64
           T+L++ FP    +L  H    V   F+  K+   +C +I D
Sbjct: 51  TVLALLFPNGFHLLLKHEGGDVSSCFKCHKIDPSICKWILD 91


>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 933

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +1

Query: 22  NVGPRVRKCNNIGAV*NVGTHYLPNFKEPLYRKTAMKSQ 138
           +VG  +   +N G   ++     PN   PL   +++KSQ
Sbjct: 163 DVGKLLHSKDNSGLGTSISMSLRPNLARPLLTASSVKSQ 201


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 174 LFSSGSSFKITLK*YDILLIY 236
           L S  SS+KI  K   ILL+Y
Sbjct: 346 LLSDSSSYKIVSKNNHILLLY 366


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +3

Query: 75  RDTLPSELQ-RTSLQENGDEKPIFSS*TEKTHSKLFSSGSSF 197
           + +L SE   R S +EN   K  F++   K H KL S  +S+
Sbjct: 530 KKSLSSEFDIRQSFKENWVVKSNFNNNLRKLHEKLQSLFASY 571


>SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 73  VGTHYLPNFKEPLYRKTAMKSQ 138
           + T  +PNF+ P Y K  M+ +
Sbjct: 245 LATSNIPNFQPPKYAKRKMEKK 266


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,018,933
Number of Sequences: 5004
Number of extensions: 17912
Number of successful extensions: 50
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 43306998
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)