Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24a13
         (247 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0676 + 5194718-5194940,5195420-5195952                           27   2.8  
12_01_0386 + 3023431-3023522,3023951-3024097,3024227-3024308,302...    26   3.7  
07_03_1297 + 25587445-25587502,25587646-25587740,25588426-255886...    26   3.7  
03_05_0082 - 20595935-20596039,20596103-20596189,20596468-205965...    26   4.9  
07_03_0446 - 18285132-18285221,18285437-18285499,18285805-182858...    25   6.4  
04_04_0668 - 27109038-27109183,27109401-27109504,27109784-27109851     25   8.5  
02_01_0602 + 4481869-4482111,4482315-4482472,4482603-4483467           25   8.5  

>01_01_0676 + 5194718-5194940,5195420-5195952
          Length = 251

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = -1

Query: 247 FFFS*INKMSYYFNVILKLLPLENNFECV 161
           +  S +N ++ YF++I +L+P+  N E +
Sbjct: 135 YILSILNSLAEYFHLINELMPVAKNIEAI 163


>12_01_0386 +
           3023431-3023522,3023951-3024097,3024227-3024308,
           3024801-3024842,3024930-3024989,3025430-3027109,
           3027239-3027340,3027461-3027604,3027704-3027829,
           3027933-3028100
          Length = 880

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 60  RRLKCRDTLPSELQRTSLQENGDEKPIF 143
           + L CR+ +  E   TSL   GDE P F
Sbjct: 303 KSLSCRNPVVHENTNTSLFHGGDEVPAF 330


>07_03_1297 +
           25587445-25587502,25587646-25587740,25588426-25588629,
           25588843-25588959,25589084-25589212,25589591-25589717,
           25590174-25590277,25590369-25590473,25590969-25591190,
           25591869-25591967
          Length = 419

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +1

Query: 94  NFKEPLYRKTAMKSQYFQVKRKKHTQN 174
           NF  P+Y  + ++ +Y Q+ +K  T N
Sbjct: 375 NFTIPMYNTSKLQVRYLQIAKKSKTYN 401


>03_05_0082 -
           20595935-20596039,20596103-20596189,20596468-20596586,
           20596686-20596924,20597044-20597100,20597203-20597909,
           20599827-20600192
          Length = 559

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/28 (35%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = -2

Query: 144 KILAFHRRFPVKRFFEVRKVMCP--YIS 67
           +I A+   FP+++F + + +M P  YIS
Sbjct: 222 QIFAYAANFPIQKFMQAQSIMAPSAYIS 249


>07_03_0446 -
           18285132-18285221,18285437-18285499,18285805-18285867,
           18286079-18286129,18286413-18286506,18286696-18286856,
           18287089-18287145,18287380-18287493,18287934-18287999,
           18288063-18288266,18289207-18289284,18289669-18289788,
           18290425-18290491,18290635-18290735,18290820-18290936,
           18292024-18292107,18292181-18292309,18292385-18292510,
           18292622-18292696,18292814-18292947,18293032-18293137,
           18293220-18293276,18294387-18294573,18295244-18295407,
           18296129-18296353,18296538-18296744,18297043-18297375,
           18297604-18297993
          Length = 1220

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -2

Query: 156 PFNLKILAFHRRFPVKRFFEVRKVMCPYISDGA 58
           PFN+  +AF+R+  +K    + K   P   D A
Sbjct: 727 PFNIHGVAFYRKKVIKAIMAILKTTLPGCDDDA 759


>04_04_0668 - 27109038-27109183,27109401-27109504,27109784-27109851
          Length = 105

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = +1

Query: 73  VGTHYLPNFKEPLYRKTAMKSQYFQVKRKKHTQN 174
           +G HY    KEP Y +T   S      R   T++
Sbjct: 56  LGGHYASICKEPNYERTTEASHILSTSRTSKTED 89


>02_01_0602 + 4481869-4482111,4482315-4482472,4482603-4483467
          Length = 421

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 54  HWRRLKCRDTLPSELQRTSLQENGDEKP 137
           HWRR  C + +    + TS+  NG+  P
Sbjct: 370 HWRRFSCDEDVWCIKKITSVAANGNAAP 397


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,912,606
Number of Sequences: 37544
Number of extensions: 94657
Number of successful extensions: 217
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 14,793,348
effective HSP length: 60
effective length of database: 12,540,708
effective search space used: 263354868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)