Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte24a13
(247 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein ... 27 1.3
AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein. 27 1.3
U53180-4|AAA96286.2| 558|Caenorhabditis elegans Suppressor of p... 27 2.3
AY160228-1|AAN62581.1| 558|Caenorhabditis elegans suppressor of... 27 2.3
AF548624-1|AAN59932.1| 558|Caenorhabditis elegans suppressor of... 27 2.3
Z81071-2|CAB03012.1| 618|Caenorhabditis elegans Hypothetical pr... 26 4.1
Z49967-7|CAA90257.1| 740|Caenorhabditis elegans Hypothetical pr... 26 4.1
Z81550-7|CAH60764.1| 581|Caenorhabditis elegans Hypothetical pr... 25 5.4
Z70211-6|CAH60769.1| 581|Caenorhabditis elegans Hypothetical pr... 25 5.4
L09634-1|AAA27967.1| 776|Caenorhabditis elegans Hypothetical pr... 25 5.4
Z81054-12|CAB61006.1| 1781|Caenorhabditis elegans Hypothetical p... 25 7.1
Z81032-6|CAB60991.1| 1781|Caenorhabditis elegans Hypothetical pr... 25 7.1
Z66497-4|CAA91284.1| 401|Caenorhabditis elegans Hypothetical pr... 25 7.1
AF040655-12|AAB95039.1| 507|Caenorhabditis elegans Hypothetical... 25 7.1
AF038576-1|AAC38973.1| 1781|Caenorhabditis elegans CED-5 protein. 25 7.1
>U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein 418
protein.
Length = 1829
Score = 27.5 bits (58), Expect = 1.3
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -1
Query: 244 FFS*INKMSYYFNVILKLLPLENNFECVF 158
FF +N+ + ++ V+L PL+NN E +F
Sbjct: 761 FFKNLNEYTIHYRVLLTGTPLQNNLEELF 789
>AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.
Length = 1829
Score = 27.5 bits (58), Expect = 1.3
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -1
Query: 244 FFS*INKMSYYFNVILKLLPLENNFECVF 158
FF +N+ + ++ V+L PL+NN E +F
Sbjct: 761 FFKNLNEYTIHYRVLLTGTPLQNNLEELF 789
>U53180-4|AAA96286.2| 558|Caenorhabditis elegans Suppressor of
presenilin defectprotein 1 protein.
Length = 558
Score = 26.6 bits (56), Expect = 2.3
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Frame = -1
Query: 142 NIG-FSSPFSCK-EVL*SSEGNVSLHFRRRQCCCTYEPEVPH*DTRRK 5
N+G SSP + K E+ S+G+ L +R ++ C E EV D+RRK
Sbjct: 383 NVGETSSPSAQKTEIQSESDGSGPLIWRHKKTVCMEEIEVLADDSRRK 430
>AY160228-1|AAN62581.1| 558|Caenorhabditis elegans suppressor of
presenilin 1 protein.
Length = 558
Score = 26.6 bits (56), Expect = 2.3
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Frame = -1
Query: 142 NIG-FSSPFSCK-EVL*SSEGNVSLHFRRRQCCCTYEPEVPH*DTRRK 5
N+G SSP + K E+ S+G+ L +R ++ C E EV D+RRK
Sbjct: 383 NVGETSSPSAQKTEIQSESDGSGPLIWRHKKTVCMEEIEVLADDSRRK 430
>AF548624-1|AAN59932.1| 558|Caenorhabditis elegans suppressor of
presenilin defect protein.
Length = 558
Score = 26.6 bits (56), Expect = 2.3
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Frame = -1
Query: 142 NIG-FSSPFSCK-EVL*SSEGNVSLHFRRRQCCCTYEPEVPH*DTRRK 5
N+G SSP + K E+ S+G+ L +R ++ C E EV D+RRK
Sbjct: 383 NVGETSSPSAQKTEIQSESDGSGPLIWRHKKTVCMEEIEVLADDSRRK 430
>Z81071-2|CAB03012.1| 618|Caenorhabditis elegans Hypothetical
protein F28F8.2 protein.
Length = 618
Score = 25.8 bits (54), Expect = 4.1
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = +1
Query: 70 NVGTHYLPNFKEPLYRKTAMKSQYFQVKRKKHT 168
NV HYL + RKT MK F KR KH+
Sbjct: 140 NVNPHYLHEELRFVMRKTGMK-VLFAPKRHKHS 171
>Z49967-7|CAA90257.1| 740|Caenorhabditis elegans Hypothetical
protein F54C9.9 protein.
Length = 740
Score = 25.8 bits (54), Expect = 4.1
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = +3
Query: 108 SLQENGDEKPIFS 146
++QEN DEKPIFS
Sbjct: 396 NIQENEDEKPIFS 408
>Z81550-7|CAH60764.1| 581|Caenorhabditis elegans Hypothetical
protein K11E4.5b protein.
Length = 581
Score = 25.4 bits (53), Expect = 5.4
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +1
Query: 112 YRKTAMKSQYFQVKRKKHTQNCFL 183
+R+T ++ FQ R KHT C +
Sbjct: 34 FRRTVVEKALFQEYRCKHTNTCLI 57
>Z70211-6|CAH60769.1| 581|Caenorhabditis elegans Hypothetical
protein K11E4.5b protein.
Length = 581
Score = 25.4 bits (53), Expect = 5.4
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +1
Query: 112 YRKTAMKSQYFQVKRKKHTQNCFL 183
+R+T ++ FQ R KHT C +
Sbjct: 34 FRRTVVEKALFQEYRCKHTNTCLI 57
>L09634-1|AAA27967.1| 776|Caenorhabditis elegans Hypothetical
protein C30C11.4 protein.
Length = 776
Score = 25.4 bits (53), Expect = 5.4
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +3
Query: 60 RRLKCRDTLPSELQRT--SLQENGDEKPIFSS*TEKTHSKLFS 182
R +DT P ++ + S ENG E +FS E SKL S
Sbjct: 393 REFAIKDTQPYRIRLSWNSTGENGGENDVFSPRDEVPFSKLVS 435
>Z81054-12|CAB61006.1| 1781|Caenorhabditis elegans Hypothetical
protein C02F4.1 protein.
Length = 1781
Score = 25.0 bits (52), Expect = 7.1
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +3
Query: 60 RRLKCRDTLPSELQRTSLQENGDEKPIF 143
RR+K D+LP++L+ T + E D PI+
Sbjct: 1479 RRIKTADSLPTDLRFTEIVELSD--PIY 1504
>Z81032-6|CAB60991.1| 1781|Caenorhabditis elegans Hypothetical protein
C02F4.1 protein.
Length = 1781
Score = 25.0 bits (52), Expect = 7.1
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +3
Query: 60 RRLKCRDTLPSELQRTSLQENGDEKPIF 143
RR+K D+LP++L+ T + E D PI+
Sbjct: 1479 RRIKTADSLPTDLRFTEIVELSD--PIY 1504
>Z66497-4|CAA91284.1| 401|Caenorhabditis elegans Hypothetical
protein K08F8.2 protein.
Length = 401
Score = 25.0 bits (52), Expect = 7.1
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = +3
Query: 66 LKCRDTLPSELQRTSLQENGDEKPIFSS*TE---KTHSKLFSSGSS 194
L+ +PS LQ LQ + P+++S + + S LFSS SS
Sbjct: 146 LQAASHIPSMLQLCQLQPTTIQSPVYASTQQPASTSASSLFSSSSS 191
>AF040655-12|AAB95039.1| 507|Caenorhabditis elegans Hypothetical
protein T24E12.1 protein.
Length = 507
Score = 25.0 bits (52), Expect = 7.1
Identities = 6/10 (60%), Positives = 9/10 (90%)
Frame = -1
Query: 52 CCTYEPEVPH 23
CC ++PE+PH
Sbjct: 165 CCLFDPEIPH 174
>AF038576-1|AAC38973.1| 1781|Caenorhabditis elegans CED-5 protein.
Length = 1781
Score = 25.0 bits (52), Expect = 7.1
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +3
Query: 60 RRLKCRDTLPSELQRTSLQENGDEKPIF 143
RR+K D+LP++L+ T + E D PI+
Sbjct: 1479 RRIKTADSLPTDLRFTEIVELSD--PIY 1504
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,637,059
Number of Sequences: 27780
Number of extensions: 101534
Number of successful extensions: 217
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 12,740,198
effective HSP length: 61
effective length of database: 11,045,618
effective search space used: 220912360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -