Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24a08
         (666 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0543 + 11360514-11361350,11361434-11361559,11361648-113619...    31   0.62 
02_02_0393 - 9711835-9712388,9712438-9712657,9713007-9713271,971...    31   0.82 
11_01_0150 + 1256029-1256137,1256206-1256247,1256345-1256455,125...    30   1.4  
02_02_0398 - 9777596-9778146,9778229-9778400,9778522-9778639,977...    29   4.4  

>02_02_0543 +
           11360514-11361350,11361434-11361559,11361648-11361976,
           11362078-11362861
          Length = 691

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +1

Query: 427 DQPRHFIPSSVMRRALSVAFKPIPGTEVWKVREVLTRGI 543
           D  RHF P  + R    V F+P+ G ++ KV  +  RG+
Sbjct: 533 DVQRHFRPELISRLTEMVVFRPLSGEQLRKVARLQLRGM 571


>02_02_0393 -
           9711835-9712388,9712438-9712657,9713007-9713271,
           9713409-9713476,9713587-9714209,9714307-9714462,
           9714551-9714648,9714734-9714825,9714928-9715017
          Length = 721

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = -1

Query: 447 NEVPWLI*--SPTKVQSFKCKISYYNNKNRIDQGQNYNET*NQRSN*LKKRRKRC 289
           N VPW+I   + T  +SF   IS  N +  + Q  NYN T N  +  +    KRC
Sbjct: 323 NAVPWVITVAASTIDRSFPTVISLGNKEKLVGQSLNYNSTMNSSNFHMLVDGKRC 377


>11_01_0150 +
           1256029-1256137,1256206-1256247,1256345-1256455,
           1256538-1256600,1256678-1256910,1256999-1257223,
           1257319-1257411,1257493-1257591,1257840-1257956
          Length = 363

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = +1

Query: 400 EGLYLSWRLDQPRHFI-PSSVMRRALSVAFKPI-PGTEVWKVREVLTRGILLAHSLATS 570
           + L+++WR D  RHF+ P+  M++A+    K   P    W V+E       +A SL  S
Sbjct: 210 KSLWINWRGDLHRHFVKPAKTMQQAIKNKPKDFDPSDWQWLVQEHFYSKDFIAMSLRNS 268


>02_02_0398 -
           9777596-9778146,9778229-9778400,9778522-9778639,
           9778751-9779014,9779287-9779354,9779520-9780145,
           9780257-9780412,9780528-9780625,9780741-9780832,
           9780940-9781011
          Length = 738

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = -1

Query: 450 RNEVPWLI*--SPTKVQSFKCKISYYNNKNRIDQGQNYNET 334
           RN VPW+I   + T  ++F   IS  NNK  + Q   YN T
Sbjct: 317 RNTVPWVITVAASTIDRAFPTVISLGNNKKFVGQSLYYNAT 357


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,318,677
Number of Sequences: 37544
Number of extensions: 265025
Number of successful extensions: 508
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)