Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24a02
         (587 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    28   0.88 
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    28   1.2  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   6.2  
SPBC215.06c |||human LYHRT homolog|Schizosaccharomyces pombe|chr...    25   6.2  
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   6.2  
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac...    25   8.2  
SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa...    25   8.2  
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi...    25   8.2  

>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 28.3 bits (60), Expect = 0.88
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 345  LKQEEGECPTPSLCVEKLKNPAHAGEITKCLPGKFIN-VTS 464
            ++ E+G  P     +E L+  A  GE    LPG F+N +TS
Sbjct: 1501 VRSEQGSGPVTDFAIELLRT-AVGGENPMALPGNFVNSITS 1540


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 21/77 (27%), Positives = 33/77 (42%)
 Frame = +3

Query: 246 NSKMTKNVAKIDVKSCVKAEPPHPCDPIVPCDPLKQEEGECPTPSLCVEKLKNPAHAGEI 425
           N+ +T N A+  VKS  + + P P D  V     K +E          EKL++    G I
Sbjct: 328 NANLTLNEAQQSVKSLTERQGPRPSDNGVQDLQEKMQEVNAEKLQHENEKLESSHELGSI 387

Query: 426 TKCLPGKFINVTSCAKE 476
                 K I++ +  +E
Sbjct: 388 RTLKAQKLIDLDNIKRE 404


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 1/78 (1%)
 Frame = +3

Query: 147  KLQDGKPLMPEDRNHDSCACSDQKNQEDRHR*TNSKMTKNVAKIDVKSCVKAEPPHPCD- 323
            K+Q   P   +   HDS   S   ++E+     + + +K+ A +  K      P HP   
Sbjct: 1630 KMQPPAPSPLQPSGHDSDNWSQHGDEEEEDSEDDIRSSKDAAALAAKLFGGMAPAHPVST 1689

Query: 324  PIVPCDPLKQEEGECPTP 377
            P V        +   PTP
Sbjct: 1690 PPVRPQSAAPPQMSAPTP 1707


>SPBC215.06c |||human LYHRT homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 178

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = +3

Query: 183 RNHDSCACSDQKNQEDRHR*TNSKMTKNVAKIDVKSCVKAE-PPHPCDPIVPCDPLKQEE 359
           RNH SC    Q+ Q+  +R T  ++ K  AK++  +    E  P+  +   P  P K   
Sbjct: 43  RNHTSCMTEAQRYQKGLYRPTKKELKK--AKMNGNAVNSKELSPNTDNQNTPAGPTKHSL 100

Query: 360 GE 365
            E
Sbjct: 101 DE 102


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 4   QN*TAIKTASKNGTVDFTKCQT 69
           QN  ++ T SKN + DFTK Q+
Sbjct: 258 QNNVSLSTNSKNYSTDFTKIQS 279


>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 8/69 (11%)
 Frame = +3

Query: 57  KMSDNNNS-------CTQNCKT-QKNKCQPCLGPVTVQKLQDGKPLMPEDRNHDSCACSD 212
           K+ D NNS         QN  + Q  + +  L P+   K Q+ K L            SD
Sbjct: 105 KIEDQNNSLEKTEFIALQNANSLQDTQAKLRLDPLLAIKQQEQKQLQTLMEKRKYSLDSD 164

Query: 213 QKNQEDRHR 239
           +K++E RHR
Sbjct: 165 RKSKERRHR 173


>SPBC530.15c ||SPBC661.01|spermidine family transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 516

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = -1

Query: 305 FGFHTRFDVDFCNVFSHFAVCSSVSVFLIFLVRTSAGVVVPVFRHQ 168
           FG  T F      +   ++ CS+ ++    L+R+S G   P+F  Q
Sbjct: 426 FGIITIFQQTINYIIDCYSGCSASAIAANTLLRSSFGAAFPLFTTQ 471


>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
           reductase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1053

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -1

Query: 278 DFCNV-FSHFAVCSSVSVFLIFLVRTSAGVVVPVFRHQRL 162
           + C++ F H+A  S+ +  LI LVR+      P F+ QRL
Sbjct: 432 ELCSIPFKHYAATSAAAARLIPLVRSQ----YPDFKSQRL 467


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,704,148
Number of Sequences: 5004
Number of extensions: 59139
Number of successful extensions: 183
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)