Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23p24
         (541 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase |Schizosac...    27   1.8  
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c...    27   2.3  
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    26   4.1  
SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase |Sc...    25   7.2  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    25   9.5  

>SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +3

Query: 210 KDCVKEVYNLLNEYASKLYPDLDVEQV 290
           K  V EV +L+N+   +L+PD D +++
Sbjct: 538 KQLVAEVTDLINKLGPELFPDFDPDRI 564


>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 767

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = +3

Query: 219 VKEVYNLLNEYASKLYPDLDVEQVPPSA 302
           +KE+ N +  +  +L PDL+++ + P +
Sbjct: 525 IKEIVNEIEAWRQQLSPDLEIQNIGPDS 552


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 229 TSLTQSFSLKLHVQKKPLKPGSK 161
           TSL Q FSL+L  +   L PGS+
Sbjct: 356 TSLMQGFSLRLQNELSKLYPGSR 378


>SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 611

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +1

Query: 355 RLILETY*EGKWIQ*KKIRRNLYGLKDFKWLK 450
           RL+L TY +G W   +   RN+  LK F++L+
Sbjct: 573 RLVLPTYAKGGWFSFRNHFRNI-TLKVFRFLR 603


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
            Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +3

Query: 168  PGFKGFFCTCNFREKDCVKEVYNLLN 245
            P  KGFF +    +K+ ++++  LLN
Sbjct: 1682 PAIKGFFHSSVLNQKNSLQDILRLLN 1707


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,858,908
Number of Sequences: 5004
Number of extensions: 31608
Number of successful extensions: 81
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)