Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23p24
         (541 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC000448-1|AAH00448.1|  353|Homo sapiens THUMP domain containing...    73   9e-13
AK000281-1|BAA91050.1|  353|Homo sapiens protein ( Homo sapiens ...    72   1e-12
AC004381-1|AAC31666.1|  242|Homo sapiens Unknown gene product pr...    40   0.006

>BC000448-1|AAH00448.1|  353|Homo sapiens THUMP domain containing 1
           protein.
          Length = 353

 Score = 72.5 bits (170), Expect = 9e-13
 Identities = 45/129 (34%), Positives = 69/129 (53%), Gaps = 3/129 (2%)
 Frame = +3

Query: 162 LEPGFKGFFCTCNFREKDCVKEVYNLLNEYASKLY-PD--LDVEQVPPSAVPXXXXXXXX 332
           LEPG +G   TCN  E+ CV+E Y+LLNEY   +Y P+   D +Q P  +          
Sbjct: 39  LEPGLQGILITCNMNERKCVEEAYSLLNEYGDDMYGPEKFTDKDQQPSGS---------- 88

Query: 333 XXXXXXXXXXIGDILRREVDSIKKNSQKSLRFKRFQVVETGASNCIFVKTNLPSPEELTT 512
                         L++EV  IK +++  +R +RFQ VE+GA+N +F++T    PE+L  
Sbjct: 89  ----EGEDDDAEAALKKEVGDIKASTE--MRLRRFQSVESGANNVVFIRTLGIEPEKLVH 142

Query: 513 AIIKDLIAT 539
            I++D+  T
Sbjct: 143 HILQDMYKT 151


>AK000281-1|BAA91050.1|  353|Homo sapiens protein ( Homo sapiens
           cDNA FLJ20274 fis, clone HEP02123. ).
          Length = 353

 Score = 72.1 bits (169), Expect = 1e-12
 Identities = 45/129 (34%), Positives = 69/129 (53%), Gaps = 3/129 (2%)
 Frame = +3

Query: 162 LEPGFKGFFCTCNFREKDCVKEVYNLLNEYASKLY-PD--LDVEQVPPSAVPXXXXXXXX 332
           LEPG +G   TCN  E+ CV+E Y+LLNEY   +Y P+   D +Q P  +          
Sbjct: 39  LEPGLQGILITCNMNERKCVEEAYSLLNEYGDDMYGPEKFTDKDQRPSGS---------- 88

Query: 333 XXXXXXXXXXIGDILRREVDSIKKNSQKSLRFKRFQVVETGASNCIFVKTNLPSPEELTT 512
                         L++EV  IK +++  +R +RFQ VE+GA+N +F++T    PE+L  
Sbjct: 89  ----EGEDDDAEAALKKEVGDIKASTE--MRLRRFQSVESGANNVVFIRTLGIEPEKLVH 142

Query: 513 AIIKDLIAT 539
            I++D+  T
Sbjct: 143 HILQDMYKT 151


>AC004381-1|AAC31666.1|  242|Homo sapiens Unknown gene product
           protein.
          Length = 242

 Score = 39.9 bits (89), Expect = 0.006
 Identities = 17/40 (42%), Positives = 28/40 (70%)
 Frame = +3

Query: 420 LRFKRFQVVETGASNCIFVKTNLPSPEELTTAIIKDLIAT 539
           +R +RFQ VE+GA+N +F++T    PE+L   I++D+  T
Sbjct: 1   MRLRRFQSVESGANNVVFIRTLGIEPEKLVHHILQDMYKT 40


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,744,679
Number of Sequences: 237096
Number of extensions: 1061402
Number of successful extensions: 1643
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1643
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5251598958
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)