Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte23p22
(621 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0203 + 1459600-1460010 30 1.3
01_01_1044 + 8231933-8231941,8232091-8232166,8232423-8232871 30 1.7
10_02_0079 + 5016115-5016936 29 3.9
03_03_0117 - 14583102-14583186,14585202-14585336,14585440-145856... 28 5.2
07_03_1389 + 26212117-26212119,26212721-26212875,26213402-262134... 28 6.9
06_03_1048 + 27146475-27146652,27146739-27146804,27146880-271469... 28 6.9
12_02_0291 + 16951154-16952740 27 9.1
09_04_0361 - 16948740-16948860,16948951-16949018,16949424-169495... 27 9.1
04_03_0988 - 21469811-21469831,21470823-21471047,21471327-214716... 27 9.1
01_05_0359 + 21350580-21350829,21350990-21351064,21351156-213512... 27 9.1
01_01_0792 - 6171400-6171957 27 9.1
>05_01_0203 + 1459600-1460010
Length = 136
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = +3
Query: 339 ATRRTGRHYSVSCPSLVTELKKSCRPSDHMGPFGTRAVSCVSIKAP 476
A RRT + +S+S + K CRP G R V+C IK P
Sbjct: 4 AWRRTSK-FSISQRDFARKRKYLCRPMPPYGTLEYRTVTCSMIKVP 48
>01_01_1044 + 8231933-8231941,8232091-8232166,8232423-8232871
Length = 177
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Frame = +3
Query: 468 KAPIQCPPHCPLCALGLLQPVTPVVGLKRSYSKPAGTPPTSGPCPFPCG-PC 620
K ++ P CP C+ P+ R P PP PCP PC PC
Sbjct: 100 KCNVKLKPGCP-CSCSTPCSFPPIGCHDRGICPPPCPPPCPLPCPPPCPLPC 150
>10_02_0079 + 5016115-5016936
Length = 273
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +3
Query: 486 PPHCPLCALGLLQPVT-PVVGLKRSYSKPAGTPPTSGPCPFPCGP 617
PP P A+ P P+ G ++S PA PP + CP P P
Sbjct: 21 PPTNPRNAIPAANPAANPISGA--AHSAPANAPPPATECPVPPPP 63
>03_03_0117 -
14583102-14583186,14585202-14585336,14585440-14585604,
14586168-14586245,14586796-14586941
Length = 202
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +3
Query: 345 RRTGRHYSVSCPSLVTELKKSCRPSDHMGPFG 440
R GR + LV L++ CRP D PFG
Sbjct: 27 RYGGRDRDLPTSLLVRNLRRDCRPDDLRRPFG 58
>07_03_1389 +
26212117-26212119,26212721-26212875,26213402-26213479,
26214211-26214375,26214453-26214554,26214661-26214786,
26215454-26215490
Length = 221
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +3
Query: 345 RRTGRHYSVSCPSLVTELKKSCRPSDHMGPFG 440
R GR + LV L++ CRP D PFG
Sbjct: 31 RYGGRGRDLPTSLLVRNLRRDCRPEDLRRPFG 62
>06_03_1048 +
27146475-27146652,27146739-27146804,27146880-27146975,
27147073-27147152,27148165-27148209,27148326-27148420,
27148623-27148632
Length = 189
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/40 (37%), Positives = 17/40 (42%), Gaps = 4/40 (10%)
Frame = +3
Query: 501 LCALGLLQPVTPVVGLKRSY----SKPAGTPPTSGPCPFP 608
LC L L P+ + Y PA PP S P PFP
Sbjct: 7 LCRLPRLLPLAAAAAASKPYLPGKPSPAPPPPLSSPPPFP 46
>12_02_0291 + 16951154-16952740
Length = 528
Score = 27.5 bits (58), Expect = 9.1
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -3
Query: 619 HGPHGNGHGPLVGGVPAGLEYDLF 548
HGP G G ++G + L+YD++
Sbjct: 249 HGPPGTGKSTMIGAMANFLDYDVY 272
>09_04_0361 -
16948740-16948860,16948951-16949018,16949424-16949510,
16949626-16949694,16949786-16949854,16949944-16950765
Length = 411
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = +2
Query: 203 RGHQEKHRAVIGCGEESRPAGE 268
RGH E HR G GE R AGE
Sbjct: 53 RGHAEHHRNGGGGGEHRREAGE 74
>04_03_0988 -
21469811-21469831,21470823-21471047,21471327-21471634,
21471864-21472234,21472327-21472430,21473086-21473325
Length = 422
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +1
Query: 301 HKRRYW*LRAADERLDELVATTACRVPALLQSSRRVADQAITWAPLE 441
+K+R W A D D +V +VPAL+ + +Q++ + P E
Sbjct: 192 YKKRAWFAVAKDFSEDFMVTYDFDKVPALVSLHPKYKEQSVFYGPFE 238
>01_05_0359 +
21350580-21350829,21350990-21351064,21351156-21351236,
21352633-21352830,21352930-21353019,21353096-21353253,
21353350-21353472,21354989-21355096,21355530-21355826
Length = 459
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +2
Query: 74 QNFQVTNRRVNKINVNNGFSSEEGCFDEKCVVLKMHQGASFDFRGHQ 214
QN + + + + N+ + + + ++ K+H GA FD RGHQ
Sbjct: 175 QNGTILKKTLRRGNLEGQHTENQAVVGVR-LIGKLHDGAVFDQRGHQ 220
>01_01_0792 - 6171400-6171957
Length = 185
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Frame = +3
Query: 495 CPLCALGLLQPVTPVVGLKRSYSKPA-GTPPTSGPCP 602
CP+C + P T + K S A TPP P P
Sbjct: 137 CPMCRAAVEGPATAAIAKKASSGGGATDTPPVVAPAP 173
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,955,200
Number of Sequences: 37544
Number of extensions: 411998
Number of successful extensions: 1355
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1353
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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