Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23p21
         (614 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomy...    28   0.93 
SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|...    25   6.6  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    25   6.6  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   8.7  
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe...    25   8.7  

>SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 496

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +1

Query: 367 QNSFRRVETNETENLTKLFWFVTTRSQPAYGSIH 468
           +N++RRV    +EN +K+FWF  + +   +   H
Sbjct: 19  KNAYRRVNLCLSENSSKIFWFCRSSADGGFDVGH 52


>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1018

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 522 FEVIYCFFRLISHVPPIVMN*AIS 451
           F++ YC+F +    PP   N AI+
Sbjct: 207 FDITYCYFPITFRAPPDATNLAIT 230


>SPAC23D3.13c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1616

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -3

Query: 177 AGIVVNRSSSSLELSTPTRNRI 112
           A I++NRS +S  LST + NR+
Sbjct: 646 ADIILNRSPTSKHLSTSSLNRV 667


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -3

Query: 546  FGVGNNGLFEVIYCFFRLISHVPPIVMN*AISRLRS 439
            + VG N  +  ++  F L+S+VP I    A SR R+
Sbjct: 2327 YNVGRNHPYHSLHVLFSLVSNVPEIENLDAGSRYRA 2362


>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 716

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -2

Query: 370 SGYLAR*HIFHAKMVLYNKYYGH 302
           SGYL   HI HAK  L N+Y+ +
Sbjct: 216 SGYL---HIGHAKAALLNQYFAN 235


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,674,091
Number of Sequences: 5004
Number of extensions: 57369
Number of successful extensions: 143
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)