Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23p21
         (614 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0264 - 15996707-15996919,15997002-15997139                       29   3.9  
02_02_0374 + 9538478-9540385                                           29   3.9  
02_02_0246 - 8243584-8243696,8243848-8244415,8244500-8244685,824...    29   3.9  
12_01_0177 - 1312229-1312498,1314758-1315630,1315729-1315885,131...    28   5.1  
09_04_0146 - 15080906-15081322,15081556-15081697,15081804-150818...    28   5.1  
01_01_1170 - 9318332-9318461,9318551-9318613,9318694-9318744,931...    28   6.8  
09_06_0249 - 21853325-21853484,21853523-21853902,21854012-21854185     27   8.9  
05_03_0109 + 8490841-8490940,8492098-8493057,8494055-8495520           27   8.9  
02_05_1079 + 33950290-33950337,33950418-33952586,33952690-339527...    27   8.9  

>03_03_0264 - 15996707-15996919,15997002-15997139
          Length = 116

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
 Frame = +1

Query: 385 VETNETEN----LTKLFWFVTTRSQPAYGSIH-DYGWNMAYKSEKTVYN 516
           VE  ET      +  ++WF+TT S   YG +H +    M Y +   ++N
Sbjct: 37  VEKEETRKPAFYVASMYWFITTLSTVGYGDMHAENTGEMVYTTAYMLFN 85


>02_02_0374 + 9538478-9540385
          Length = 635

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 144 LELSTPTRNRIWRIMNPKCCSQVLIYHLRSH 52
           +E+S   R   W ++N K C+ V I  L+ H
Sbjct: 392 VEMSIFARKEKWNLLNQKSCTMVAISSLKEH 422


>02_02_0246 -
           8243584-8243696,8243848-8244415,8244500-8244685,
           8244772-8244804,8244901-8244999,8245091-8245330,
           8246130-8246447,8246589-8246646,8246788-8246846,
           8246888-8246960,8247004-8247219,8247326-8247495
          Length = 710

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 382 RVETNETENLTKLFWFVTTRSQPAYGSIH 468
           R E+  T  +T L+W +TT +   YG +H
Sbjct: 228 RSESLWTRYITALYWSITTLTTTGYGDLH 256


>12_01_0177 -
           1312229-1312498,1314758-1315630,1315729-1315885,
           1316207-1316247
          Length = 446

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +1

Query: 250 RIAAACFVAEGMKI-SIRSVHNIYYTEPFWREKCVS 354
           ++ + C V E + I S   +HN++ +EP  R +C+S
Sbjct: 247 QLISKCHVLEWLSIQSCNQLHNLHVSEPLCRLQCLS 282


>09_04_0146 -
           15080906-15081322,15081556-15081697,15081804-15081887,
           15081982-15082039,15084038-15084572
          Length = 411

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 427 FVTTRSQPAYGSIHDYGWNMAYKSEKTVYNFEETVVSNS 543
           +VT  + P Y + HD+ W +    +K +  FE  V+S +
Sbjct: 173 WVTPNTDPCYAAFHDHEWGVPVHDDKKL--FEMLVLSGA 209


>01_01_1170 -
           9318332-9318461,9318551-9318613,9318694-9318744,
           9318837-9318921,9319005-9319068,9319139-9319340,
           9319808-9320502
          Length = 429

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +2

Query: 452 LMAQFMTMGGTWLISRKKQYITSK-RPLFPTPKKFKAIPSASKIMGLWTG 598
           L  + +  GG+ L  R  + +  + RPL P   + K I     I+G W G
Sbjct: 346 LFERIILTGGSTLFPRFTERLEKELRPLVPDDYQVKIIAQEDPILGAWRG 395


>09_06_0249 - 21853325-21853484,21853523-21853902,21854012-21854185
          Length = 237

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +2

Query: 488 LISRKKQYITSKRPLFPTPKKFKAIPSASKIMGLWTGVMAS 610
           L+  +  YI+ +RP +P PK FK+     +    W  + A+
Sbjct: 42  LLRSEINYISERRPPYPPPKAFKSFGVEDRPGEQWVRLRAT 82


>05_03_0109 + 8490841-8490940,8492098-8493057,8494055-8495520
          Length = 841

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +1

Query: 313 IYYTEPFWREKCVSALDTQNSFRRVETNETENLTKLFWFVTTRSQPAYG 459
           I Y E  W++K +  LD  N+F     N  E+   L W  +     ++G
Sbjct: 558 ITYGEAEWKQKAIECLDKMNTFSVEARNSFEH--TLNWLTSRARSCSFG 604


>02_05_1079 +
           33950290-33950337,33950418-33952586,33952690-33952780,
           33952955-33953435,33954249-33954345
          Length = 961

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 12  WSSRGNKISLLEKNDYGDGK 71
           W++  NK + + KNDYG G+
Sbjct: 862 WNNINNKTAFVNKNDYGKGE 881


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,760,951
Number of Sequences: 37544
Number of extensions: 341418
Number of successful extensions: 751
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)