Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23p21
         (614 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    23   3.1  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   4.1  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   7.2  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   7.2  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   9.6  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   9.6  

>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 127 WCA*FKR*RTSIDDDPRTGRPTSVVTEQMIKKI 225
           W   F+    S+ D+ R+GRP   V + +IK I
Sbjct: 46  WFDKFRSGDFSLKDEKRSGRPVE-VDDDLIKAI 77


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 267 FCSRRNEDFYKKCP 308
           F +RRN ++Y  CP
Sbjct: 184 FSARRNVEYYSCCP 197


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -3

Query: 321 IINIMDTSYRNLHSFCYKTSSSNTTI 244
           + N+M   YRN      + S SN +I
Sbjct: 315 LYNVMSAKYRNAFKETCRCSPSNPSI 340


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -3

Query: 147  SLELSTPTRNRIWRIMNPKCCSQVLIYH 64
            SL+++TP  N  W+I   K   +  ++H
Sbjct: 1008 SLDVNTPKGNMQWKIWPMKGEEKSRLFH 1035


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/40 (22%), Positives = 19/40 (47%)
 Frame = -3

Query: 339 TPKWFCIINIMDTSYRNLHSFCYKTSSSNTTIHQDNVLNF 220
           TP    +I + D ++ +LH+           +HQ ++ +F
Sbjct: 64  TPCKHPVIVLQDVAFSDLHALVEFIYHGEVNVHQRSLSSF 103


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +3

Query: 219 KNLKHCLGGSSYC 257
           KNLK CL    YC
Sbjct: 434 KNLKVCLPPGQYC 446


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,768
Number of Sequences: 438
Number of extensions: 4127
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)