Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte23p17
(701 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyc... 186 3e-48
SPBC3H7.04 |||mitochondrial ribosomal protein subunit S26|Schizo... 46 5e-06
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc... 33 0.040
SPBC16A3.14 |||mitochondrial ribosomal protein subunit S26|Schiz... 32 0.091
SPBC12C2.04 |||NAD binding dehydrogenase family protein|Schizosa... 30 0.37
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||... 29 0.64
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 27 2.6
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c... 26 4.5
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po... 26 6.0
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 25 7.9
>SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 218
Score = 186 bits (453), Expect = 3e-48
Identities = 92/189 (48%), Positives = 121/189 (64%), Gaps = 5/189 (2%)
Frame = +2
Query: 146 IRVAGASRQKHTLPELPYEYNALEPVISREIMSLHHSKHHATYINNLNVAEEKLAQAQAK 325
+ +A K TLP LPY YNALEP +S IM LHH KHH TY+NNLN A+EKLA
Sbjct: 16 VSIARGVHTKATLPPLPYAYNALEPALSETIMKLHHDKHHQTYVNNLNAAQEKLADPNL- 74
Query: 326 GDIDTIINLAPALKFNGGGHINHSIFWHNLSP---NGGKP--SDVLTKAVEKDFGSWDNL 490
D++ + L A+KFNGGGHINHS+FW L+P GGKP S L KA+ +GS ++
Sbjct: 75 -DLEGEVALQAAIKFNGGGHINHSLFWKILAPQKEGGGKPVTSGSLHKAITSKWGSLEDF 133
Query: 491 KNQLSTASVAVQGSGWGWLGYNKQMKKLQIATCQNQDPLQATTGLVPLFGIDVWEHAYYL 670
+ +++ A ++QGSGW WL +K L+I T NQD + + P+ GID WEHAYY
Sbjct: 134 QKEMNAALASIQGSGWAWLIVDKD-GSLRITTTANQDTIVKSK---PIIGIDAWEHAYYP 189
Query: 671 QYKNVRADY 697
QY+N +A+Y
Sbjct: 190 QYENRKAEY 198
>SPBC3H7.04 |||mitochondrial ribosomal protein subunit
S26|Schizosaccharomyces pombe|chr 2|||Manual
Length = 220
Score = 46.0 bits (104), Expect = 5e-06
Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 15/112 (13%)
Frame = +2
Query: 386 INHSIFWHNL-SPNG-GKPSDV----LTKAVEKDFGSWDNLKNQLSTASVAVQGSGWGWL 547
+NH F+ L SP +D+ L ++ FGS+ LK+Q+ +V G GW WL
Sbjct: 76 VNHDFFFSGLISPERPSADADLGAINLKPGIDASFGSFGELKSQMVDVGNSVFGDGWLWL 135
Query: 548 GYNKQMKKLQIATCQNQD---------PLQATTGLVPLFGIDVWEHAYYLQY 676
Y+ + + N P T +VPL +++W++AY Y
Sbjct: 136 VYSPEKSLFSLLCTYNASNAFLWGTGFPKFRTNAIVPLLCVNLWQYAYLDDY 187
>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 781
Score = 33.1 bits (72), Expect = 0.040
Identities = 32/110 (29%), Positives = 47/110 (42%)
Frame = +2
Query: 167 RQKHTLPELPYEYNALEPVISREIMSLHHSKHHATYINNLNVAEEKLAQAQAKGDIDTII 346
RQKHT P P +A S HH HH+ N L EK K + ++
Sbjct: 97 RQKHTAPATPIPVSA----------SRHHKPHHSGLKNLL----EKAMHPGHKSNANSPT 142
Query: 347 NLAPALKFNGGGHINHSIFWHNLSPNGGKPSDVLTKAVEKDFGSWDNLKN 496
+ +P+ F G IN+ I N S + P + + + K S+ +LKN
Sbjct: 143 SESPSKGF--GSFINNHILHKNTSSHPSSPVNGKSSDIHKS-QSYQHLKN 189
>SPBC16A3.14 |||mitochondrial ribosomal protein subunit
S26|Schizosaccharomyces pombe|chr 2|||Manual
Length = 277
Score = 31.9 bits (69), Expect = 0.091
Identities = 46/202 (22%), Positives = 80/202 (39%), Gaps = 35/202 (17%)
Frame = +2
Query: 176 HTLPELPYEYNALEPVISREIMSLHHSKHHATYINNLN--VAEEKLAQAQAKGDIDTIIN 349
HT+P L + N L P+ S E + + +H + LN V +L + I
Sbjct: 39 HTVPNLS-QRNLL-PLFSPEALDIAWDQHQRQVVKELNDRVKGTELEDSSVFNIIFQTAA 96
Query: 350 L---APALKFNGGGHINHSIFWHNLSPNGG--------KPSDVLTKAVEKDFGSWDNLKN 496
L A +F + NH F + + + + KAV ++FGS +NL +
Sbjct: 97 LPEHAATFQFASQAYNNHFFFQSLIGKRAADAKKNSKYEANAAINKAVNENFGSKENLLS 156
Query: 497 QLSTASVAVQGSGWGWL---GYNK--QMKKLQIAT------CQNQDPLQATT-------- 619
++ + G+ W W+ YN+ ++ Q + Q+ DP ++
Sbjct: 157 KIHELASNSFGACWLWIVIDDYNRLNLLRTFQAGSPYLWTRWQSNDPHLISSVPDYSARP 216
Query: 620 ---GLVPLFGIDVWEHAYYLQY 676
VP+ + +W HAYY Y
Sbjct: 217 RKYAHVPILNLCLWNHAYYKDY 238
>SPBC12C2.04 |||NAD binding dehydrogenase family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 384
Score = 29.9 bits (64), Expect = 0.37
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +2
Query: 257 KHHATYINNLNVAEEKLAQAQAKGDIDTIINLAPAL-KFNGGGHINHSIFWHNLSPNGG 430
K+HA K+ QA K D +N+A + ++N N+ +FW +S +GG
Sbjct: 157 KYHAIISIGYMFRYLKIVQAAKKYVADNNLNIACTIARYNSAYEHNNKLFWWYMSKSGG 215
>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1101
Score = 29.1 bits (62), Expect = 0.64
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -2
Query: 700 HVVGTNVLVLKIVRVLPYIDSEERDQSSGGLQRIL 596
H +V ++K + +P +D+EER + GLQ I+
Sbjct: 409 HTYVRSVEIIKNIAEMPTVDAEERSRIFAGLQHII 443
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 27.1 bits (57), Expect = 2.6
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +2
Query: 590 QNQDPLQATTGLVPLFGIDVW 652
++ DPL+AT+ +PLF + W
Sbjct: 2142 KHTDPLRATSDFIPLFSMQRW 2162
>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 26.2 bits (55), Expect = 4.5
Identities = 8/18 (44%), Positives = 15/18 (83%)
Frame = +3
Query: 609 RPPLDWSRSSESMYGSTR 662
+PPL WS SS +++G+++
Sbjct: 101 KPPLTWSPSSANLFGTSK 118
>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 811
Score = 25.8 bits (54), Expect = 6.0
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -2
Query: 355 CKVDNGVDITFSLCLCEFLFSNV 287
C VD+ +I+ SLC EF+ S V
Sbjct: 452 CLVDSFENISHSLCTTEFILSRV 474
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -2
Query: 277 DISRVMFAVMKTHDFTANDRLQCIVLVRK 191
D V+F+ KT ANDRLQCI+ ++
Sbjct: 3138 DQQNVLFSKTKT----ANDRLQCIIQTKQ 3162
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,945,314
Number of Sequences: 5004
Number of extensions: 62566
Number of successful extensions: 182
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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