Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23p17
         (701 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81057-6|CAB02913.1|  221|Caenorhabditis elegans Hypothetical pr...   285   3e-77
D85499-1|BAA12821.1|  221|Caenorhabditis elegans manganese super...   285   3e-77
D12984-1|BAA02363.1|  221|Caenorhabditis elegans manganese super...   285   3e-77
X85790-1|CAA59790.1|  218|Caenorhabditis elegans mangenese super...   271   4e-73
X77021-1|CAA54319.1|  218|Caenorhabditis elegans manganese super...   271   4e-73
U42844-5|AAB53822.1|  218|Caenorhabditis elegans Sod (superoxide...   271   4e-73
Z81545-2|CAB04438.1|  212|Caenorhabditis elegans Hypothetical pr...    33   0.26 
Z82288-5|CAB05324.1|  380|Caenorhabditis elegans Hypothetical pr...    28   5.6  
Z81555-3|CAB04513.1|  221|Caenorhabditis elegans Hypothetical pr...    28   5.6  
AF026555-1|AAB97516.1|  221|Caenorhabditis elegans GATA transcri...    28   5.6  
AC006603-7|ABB51201.1|  576|Caenorhabditis elegans Hypothetical ...    28   5.6  
Z74045-4|CAA98554.2|  924|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z74032-11|CAA98469.2|  924|Caenorhabditis elegans Hypothetical p...    27   9.8  
AC006757-4|AAF60545.1|  610|Caenorhabditis elegans Hypothetical ...    27   9.8  

>Z81057-6|CAB02913.1|  221|Caenorhabditis elegans Hypothetical
           protein F10D11.1 protein.
          Length = 221

 Score =  285 bits (698), Expect = 3e-77
 Identities = 131/196 (66%), Positives = 156/196 (79%)
 Frame = +2

Query: 113 IMLMSQRIGSLIRVAGASRQKHTLPELPYEYNALEPVISREIMSLHHSKHHATYINNLNV 292
           +  +S+ +  +  VA A R KH+LP+LPY+Y  LEPVIS EIM LHH KHHATY+NNLN 
Sbjct: 6   VRCVSKLVQPITGVA-AVRSKHSLPDLPYDYADLEPVISHEIMQLHHQKHHATYVNNLNQ 64

Query: 293 AEEKLAQAQAKGDIDTIINLAPALKFNGGGHINHSIFWHNLSPNGGKPSDVLTKAVEKDF 472
            EEKL +A +KG++   I L PALKFNGGGHINHSIFW NL+ +GG+PS  L  A++ DF
Sbjct: 65  IEEKLHEAVSKGNVKEAIALQPALKFNGGGHINHSIFWTNLAKDGGEPSAELLTAIKSDF 124

Query: 473 GSWDNLKNQLSTASVAVQGSGWGWLGYNKQMKKLQIATCQNQDPLQATTGLVPLFGIDVW 652
           GS DNL+ QLS ++VAVQGSGWGWLGY  + K L++ATC NQDPL+ATTGLVPLFGIDVW
Sbjct: 125 GSLDNLQKQLSASTVAVQGSGWGWLGYCPKGKILKVATCANQDPLEATTGLVPLFGIDVW 184

Query: 653 EHAYYLQYKNVRADYV 700
           EHAYYLQYKNVR DYV
Sbjct: 185 EHAYYLQYKNVRPDYV 200


>D85499-1|BAA12821.1|  221|Caenorhabditis elegans manganese
           superoxide dismutase protein.
          Length = 221

 Score =  285 bits (698), Expect = 3e-77
 Identities = 131/196 (66%), Positives = 156/196 (79%)
 Frame = +2

Query: 113 IMLMSQRIGSLIRVAGASRQKHTLPELPYEYNALEPVISREIMSLHHSKHHATYINNLNV 292
           +  +S+ +  +  VA A R KH+LP+LPY+Y  LEPVIS EIM LHH KHHATY+NNLN 
Sbjct: 6   VRCVSKLVQPITGVA-AVRSKHSLPDLPYDYADLEPVISHEIMQLHHQKHHATYVNNLNQ 64

Query: 293 AEEKLAQAQAKGDIDTIINLAPALKFNGGGHINHSIFWHNLSPNGGKPSDVLTKAVEKDF 472
            EEKL +A +KG++   I L PALKFNGGGHINHSIFW NL+ +GG+PS  L  A++ DF
Sbjct: 65  IEEKLHEAVSKGNVKEAIALQPALKFNGGGHINHSIFWTNLAKDGGEPSAELLTAIKSDF 124

Query: 473 GSWDNLKNQLSTASVAVQGSGWGWLGYNKQMKKLQIATCQNQDPLQATTGLVPLFGIDVW 652
           GS DNL+ QLS ++VAVQGSGWGWLGY  + K L++ATC NQDPL+ATTGLVPLFGIDVW
Sbjct: 125 GSLDNLQKQLSASTVAVQGSGWGWLGYCPKGKILKVATCANQDPLEATTGLVPLFGIDVW 184

Query: 653 EHAYYLQYKNVRADYV 700
           EHAYYLQYKNVR DYV
Sbjct: 185 EHAYYLQYKNVRPDYV 200


>D12984-1|BAA02363.1|  221|Caenorhabditis elegans manganese
           superoxide dismutaseprecursor protein.
          Length = 221

 Score =  285 bits (698), Expect = 3e-77
 Identities = 131/196 (66%), Positives = 156/196 (79%)
 Frame = +2

Query: 113 IMLMSQRIGSLIRVAGASRQKHTLPELPYEYNALEPVISREIMSLHHSKHHATYINNLNV 292
           +  +S+ +  +  VA A R KH+LP+LPY+Y  LEPVIS EIM LHH KHHATY+NNLN 
Sbjct: 6   VRCVSKLVQPITGVA-AVRSKHSLPDLPYDYADLEPVISHEIMQLHHQKHHATYVNNLNQ 64

Query: 293 AEEKLAQAQAKGDIDTIINLAPALKFNGGGHINHSIFWHNLSPNGGKPSDVLTKAVEKDF 472
            EEKL +A +KG++   I L PALKFNGGGHINHSIFW NL+ +GG+PS  L  A++ DF
Sbjct: 65  IEEKLHEAVSKGNVKEAIALQPALKFNGGGHINHSIFWTNLAKDGGEPSAELLTAIKSDF 124

Query: 473 GSWDNLKNQLSTASVAVQGSGWGWLGYNKQMKKLQIATCQNQDPLQATTGLVPLFGIDVW 652
           GS DNL+ QLS ++VAVQGSGWGWLGY  + K L++ATC NQDPL+ATTGLVPLFGIDVW
Sbjct: 125 GSLDNLQKQLSASTVAVQGSGWGWLGYCPKGKILKVATCANQDPLEATTGLVPLFGIDVW 184

Query: 653 EHAYYLQYKNVRADYV 700
           EHAYYLQYKNVR DYV
Sbjct: 185 EHAYYLQYKNVRPDYV 200


>X85790-1|CAA59790.1|  218|Caenorhabditis elegans mangenese
           superoxide dismutase protein.
          Length = 218

 Score =  271 bits (664), Expect = 4e-73
 Identities = 126/185 (68%), Positives = 148/185 (80%), Gaps = 2/185 (1%)
 Frame = +2

Query: 152 VAG--ASRQKHTLPELPYEYNALEPVISREIMSLHHSKHHATYINNLNVAEEKLAQAQAK 325
           VAG  A R KHTLP+LP++Y  LEPVIS EIM LHH KHHATY+NNLN  EEKL +A +K
Sbjct: 16  VAGVLAVRSKHTLPDLPFDYADLEPVISHEIMQLHHQKHHATYVNNLNQIEEKLHEAVSK 75

Query: 326 GDIDTIINLAPALKFNGGGHINHSIFWHNLSPNGGKPSDVLTKAVEKDFGSWDNLKNQLS 505
           G++   I L PALKFNGGGHINHSIFW NL+ +GG+PS  L   +++DFGS DNL+ +LS
Sbjct: 76  GNLKEAIALQPALKFNGGGHINHSIFWTNLAKDGGEPSKELMDTIKRDFGSLDNLQKRLS 135

Query: 506 TASVAVQGSGWGWLGYNKQMKKLQIATCQNQDPLQATTGLVPLFGIDVWEHAYYLQYKNV 685
             ++AVQGSGWGWLGY K+ K L+IATC NQDPL+   G+VPLFGIDVWEHAYYLQYKNV
Sbjct: 136 DITIAVQGSGWGWLGYCKKDKILKIATCANQDPLE---GMVPLFGIDVWEHAYYLQYKNV 192

Query: 686 RADYV 700
           R DYV
Sbjct: 193 RPDYV 197


>X77021-1|CAA54319.1|  218|Caenorhabditis elegans manganese
           superoxide dismutase protein.
          Length = 218

 Score =  271 bits (664), Expect = 4e-73
 Identities = 126/185 (68%), Positives = 148/185 (80%), Gaps = 2/185 (1%)
 Frame = +2

Query: 152 VAG--ASRQKHTLPELPYEYNALEPVISREIMSLHHSKHHATYINNLNVAEEKLAQAQAK 325
           VAG  A R KHTLP+LP++Y  LEPVIS EIM LHH KHHATY+NNLN  EEKL +A +K
Sbjct: 16  VAGVLAVRSKHTLPDLPFDYADLEPVISHEIMQLHHQKHHATYVNNLNQIEEKLHEAVSK 75

Query: 326 GDIDTIINLAPALKFNGGGHINHSIFWHNLSPNGGKPSDVLTKAVEKDFGSWDNLKNQLS 505
           G++   I L PALKFNGGGHINHSIFW NL+ +GG+PS  L   +++DFGS DNL+ +LS
Sbjct: 76  GNLKEAIALQPALKFNGGGHINHSIFWTNLAKDGGEPSKELMDTIKRDFGSLDNLQKRLS 135

Query: 506 TASVAVQGSGWGWLGYNKQMKKLQIATCQNQDPLQATTGLVPLFGIDVWEHAYYLQYKNV 685
             ++AVQGSGWGWLGY K+ K L+IATC NQDPL+   G+VPLFGIDVWEHAYYLQYKNV
Sbjct: 136 DITIAVQGSGWGWLGYCKKDKILKIATCANQDPLE---GMVPLFGIDVWEHAYYLQYKNV 192

Query: 686 RADYV 700
           R DYV
Sbjct: 193 RPDYV 197


>U42844-5|AAB53822.1|  218|Caenorhabditis elegans Sod (superoxide
           dismutase) protein3 protein.
          Length = 218

 Score =  271 bits (664), Expect = 4e-73
 Identities = 126/185 (68%), Positives = 148/185 (80%), Gaps = 2/185 (1%)
 Frame = +2

Query: 152 VAG--ASRQKHTLPELPYEYNALEPVISREIMSLHHSKHHATYINNLNVAEEKLAQAQAK 325
           VAG  A R KHTLP+LP++Y  LEPVIS EIM LHH KHHATY+NNLN  EEKL +A +K
Sbjct: 16  VAGVLAVRSKHTLPDLPFDYADLEPVISHEIMQLHHQKHHATYVNNLNQIEEKLHEAVSK 75

Query: 326 GDIDTIINLAPALKFNGGGHINHSIFWHNLSPNGGKPSDVLTKAVEKDFGSWDNLKNQLS 505
           G++   I L PALKFNGGGHINHSIFW NL+ +GG+PS  L   +++DFGS DNL+ +LS
Sbjct: 76  GNLKEAIALQPALKFNGGGHINHSIFWTNLAKDGGEPSKELMDTIKRDFGSLDNLQKRLS 135

Query: 506 TASVAVQGSGWGWLGYNKQMKKLQIATCQNQDPLQATTGLVPLFGIDVWEHAYYLQYKNV 685
             ++AVQGSGWGWLGY K+ K L+IATC NQDPL+   G+VPLFGIDVWEHAYYLQYKNV
Sbjct: 136 DITIAVQGSGWGWLGYCKKDKILKIATCANQDPLE---GMVPLFGIDVWEHAYYLQYKNV 192

Query: 686 RADYV 700
           R DYV
Sbjct: 193 RPDYV 197


>Z81545-2|CAB04438.1|  212|Caenorhabditis elegans Hypothetical
           protein F49H6.2 protein.
          Length = 212

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = +1

Query: 493 ESTVDSFCGSTGLRLGLAWLQQTNEEIANSYMPEPGSSAGHHWIGPALRNRCMGA 657
           + T DS C S G  L     Q+  + +ANS++   G+S+   WIG      CM +
Sbjct: 90  QPTADSLCSSEGAVLSSIQSQEELDYMANSFIALNGASSA-FWIGAERTAACMSS 143


>Z82288-5|CAB05324.1|  380|Caenorhabditis elegans Hypothetical
           protein ZK896.7 protein.
          Length = 380

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +1

Query: 496 STVDSFCGSTGLRLGLAWLQQTNEEIANSYMPEPGSSAGHHWIG 627
           +T   +C S G  L       T+  +A+S   E GS+ G  WIG
Sbjct: 45  NTAKEYCDSHGYSLATVDNAITSNFLASSAATEFGSNNGQFWIG 88


>Z81555-3|CAB04513.1|  221|Caenorhabditis elegans Hypothetical
           protein F58E10.2 protein.
          Length = 221

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 590 QNQDPLQATTGLVPLFGIDVWEHAYYLQYKNVRADY 697
           Q+ DP Q +T + P+FG     + Y  QY  +  DY
Sbjct: 72  QSYDPAQQSTPVHPMFGSLDMMNCYSQQYPQIGQDY 107


>AF026555-1|AAB97516.1|  221|Caenorhabditis elegans GATA
           transcription factor END-1 protein.
          Length = 221

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 590 QNQDPLQATTGLVPLFGIDVWEHAYYLQYKNVRADY 697
           Q+ DP Q +T + P+FG     + Y  QY  +  DY
Sbjct: 72  QSYDPAQQSTPVHPMFGSLDMMNCYSQQYPQIGQDY 107


>AC006603-7|ABB51201.1|  576|Caenorhabditis elegans Hypothetical
           protein B0524.7 protein.
          Length = 576

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 23/76 (30%), Positives = 30/76 (39%), Gaps = 6/76 (7%)
 Frame = +2

Query: 275 INNLNVAEEKLAQAQAKGDIDTIINLAPALKFNGGGHINHSIF---WH---NLSPNGGKP 436
           + N      K A+   K    +  N +  LK NG   INH +    W     +  NG  P
Sbjct: 358 LRNAKQKAAKRARKLVKNWKKSAQNKSGVLKINGNHVINHDVVVKKWKVELKIEGNGESP 417

Query: 437 SDVLTKAVEKDFGSWD 484
             V+ KA E   G WD
Sbjct: 418 RKVVRKAKETS-GYWD 432


>Z74045-4|CAA98554.2|  924|Caenorhabditis elegans Hypothetical
           protein T27F2.2 protein.
          Length = 924

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = -2

Query: 253 VMKTHDFTANDRLQCIVLVRKLWQSMLLARSTG 155
           ++  HD++ N R+ C++ V + W  +LL R +G
Sbjct: 556 LVDVHDYSTNQRISCVLGVAQDW-IVLLERPSG 587


>Z74032-11|CAA98469.2|  924|Caenorhabditis elegans Hypothetical
           protein T27F2.2 protein.
          Length = 924

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = -2

Query: 253 VMKTHDFTANDRLQCIVLVRKLWQSMLLARSTG 155
           ++  HD++ N R+ C++ V + W  +LL R +G
Sbjct: 556 LVDVHDYSTNQRISCVLGVAQDW-IVLLERPSG 587


>AC006757-4|AAF60545.1|  610|Caenorhabditis elegans Hypothetical
           protein Y40C7B.5 protein.
          Length = 610

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +3

Query: 417 HQMVASLLMFSPKPLRKTLDPGIT*RINCRQLL 515
           H++V +L  F P PL+++++P  T  IN   L+
Sbjct: 68  HKIVETLNNFKPSPLQRSIEPPKTPSINKPSLI 100


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,696,856
Number of Sequences: 27780
Number of extensions: 368087
Number of successful extensions: 990
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 986
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)