Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23p12
         (675 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...    27   2.5  
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    27   2.5  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    27   3.3  
SPAC637.07 |moe1||translation initiation factor eIF3d Moe1|Schiz...    27   3.3  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    27   3.3  
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po...    26   5.7  
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc...    25   7.6  
SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc...    25   7.6  
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom...    25   7.6  
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    25   10.0 
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch...    25   10.0 
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac...    25   10.0 

>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +2

Query: 80  PRHSTTMARHIGRITITT-PSVLTFGKACWTHI 175
           P H+TT  R I +I I   PS+LT G +C  HI
Sbjct: 553 PVHATT--RFIAQIAILELPSILTTGYSCVMHI 583


>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 16/65 (24%), Positives = 31/65 (47%)
 Frame = +1

Query: 154 ESMLDTHSLWSNLANEMQHLDNMMKELSLKFPSIINEGRVEGDKYQISIHLPGYEQKDIN 333
           E   + + +W+++  +MQ  D   ++L   F  I N G++     Q +I L G +  ++ 
Sbjct: 104 EGSTNVNEVWNDITEDMQSQDFSTEDLKQLFLLIFNNGKLR-TLLQNAIVLLGQQTTNVA 162

Query: 334 VKAKN 348
            K  N
Sbjct: 163 SKKLN 167


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
            Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = +1

Query: 118  YHHYDPFSPYVRESMLDTHSLWSNLANEMQHLDNMMKELSLKFPSIINEGRV 273
            +  Y  F    +E   +T S + NL  E+++L NM+ EL  KFP +   GR+
Sbjct: 1484 FTQYRLFDVRGKERTSNTMSTY-NL-EEVEYLVNMVDELLNKFPDVNFTGRI 1533


>SPAC637.07 |moe1||translation initiation factor eIF3d
           Moe1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 567

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
 Frame = +1

Query: 418 VNSEGSWVYEKDVLKITFPLKQ-KQPEDSKRPVAEPTETTSTNVSREEMEFTTESNV--R 588
           VNS G+   E   +   F ++  ++ E+ K  +  P    +   S+EE E         R
Sbjct: 323 VNSPGALSVEATYINQNFCVQALRETEEEKYKLPHPNPFYN---SKEESEPLAAHGYIYR 379

Query: 589 DVDVXLETAQKTNEIAKAVEATTYAVN 669
           DVD+ LET +K  ++    E   Y  N
Sbjct: 380 DVDLSLETDEKPVKLMVRTEVDGYVKN 406


>SPBC23E6.09 |ssn6||transcriptional corepressor
            Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = +1

Query: 475  LKQKQPEDSKRPVAEPTETTSTNVSREEMEFTTESNVRDVD 597
            +K ++PE + +PV    +  ST  + +E E T +++V   +
Sbjct: 908  IKPQKPEPALKPVEGTADPKSTKRNHQETEKTADTDVSSTE 948


>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 833

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 11/58 (18%), Positives = 26/58 (44%)
 Frame = +1

Query: 475 LKQKQPEDSKRPVAEPTETTSTNVSREEMEFTTESNVRDVDVXLETAQKTNEIAKAVE 648
           +K+KQPE+    V +  ++     + E +E  T   + D  +  +     +E  + ++
Sbjct: 260 IKEKQPEEEVSVVGDELKSFDKENNDEHLERVTNDKIADASMLQKAENNVSEQERNIQ 317


>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 630

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +1

Query: 67  AAVSAAPQYYHGSSHWPYHHYDPFSP 144
           A  +A PQYY     +P  HY P  P
Sbjct: 502 ATDAAKPQYYIPKDPYPVPHYYPQQP 527


>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 849

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = +3

Query: 201 NATLGQHDEGAVVEVPQHYKRRTRGRRQVSDIYSPAWLRTERHQRESEKWSAD 359
           + TL +    ++  VP     RT  +R  SD  +  W+ + R Q+  E+W  D
Sbjct: 583 DGTLIESARNSIDAVPTDRLLRTL-KRLASDSRNIVWILSGRSQKFMEEWMGD 634


>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1325

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 469 FPLKQKQPEDSKRPVAEPTETTSTNVSRE 555
           F  K    +  K P  EPTE   +N+S E
Sbjct: 885 FSFKAFGIDSKKSPTPEPTEMAESNISEE 913


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +1

Query: 496 DSKRPVAEPTETTSTNVSREEMEFTT-ESNVRDVDVXLETAQKTNEIAK 639
           DS   +++   +    +S +  E  +  S + +    LETA K NEI K
Sbjct: 536 DSLETLSQTNNSLQCEISEKNAELNSVNSKLSEGRAHLETANKENEILK 584


>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 872

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 7/25 (28%), Positives = 16/25 (64%)
 Frame = +1

Query: 118 YHHYDPFSPYVRESMLDTHSLWSNL 192
           + H+DP+S ++  ++ + H  W+ L
Sbjct: 292 FFHFDPYSLFISNNLEEIHINWNIL 316


>SPAC630.14c |tup12||transcriptional corepressor Tup12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 586

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 30/117 (25%), Positives = 43/117 (36%)
 Frame = +1

Query: 235 SLKFPSIINEGRVEGDKYQISIHLPGYEQKDINVKAKNGVLMVQANSAFNHYLKIQNLPW 414
           +L+ P+I ++G V       ++ L        +V+   G  M  A SA   +    NLP 
Sbjct: 157 NLRSPAIDSDGTVLAPIQTSNVDLGSQYYSSPHVRPAVGATM--AGSAMRTFPS--NLPL 212

Query: 415 DVNSEGSWVYEKDVLKITFPLKQKQPEDSKRPVAEPTETTSTNVSREEMEFTTESNV 585
                 S      V  I  PL          P       TS   +REE ++T  SNV
Sbjct: 213 GHPPPPSDSANSSVTPIAAPLVVNGKVSGNPPYPAEIIPTSNVPNREEKDWTVTSNV 269


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.128    0.373 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,767,830
Number of Sequences: 5004
Number of extensions: 56316
Number of successful extensions: 133
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)