Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23p05
         (597 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    27   2.7  
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual     25   6.3  
SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit S...    25   6.3  

>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1183

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 16/57 (28%), Positives = 30/57 (52%)
 Frame = +1

Query: 67  PLQAIALSLEPSLIL*SARFPFAAENIRAFYETTSKLHCNLVSLTEQIIEFNIGKQI 237
           P+++I L ++   I   A FPF     R+  E + KL  NL ++  + +   +G+Q+
Sbjct: 819 PVESIVLQMKNMNIDNIANFPFPTSPGRSRLEKSLKLLSNLGAIDSEGVLTKLGEQM 875


>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 653

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 15/55 (27%), Positives = 24/55 (43%)
 Frame = +2

Query: 296 LDCIPNIPVVILLFNNVSSHSSTCLLKRLASRSLSTQVAHIRRSSASPSKCDNWK 460
           L C+P  P ++ +   +S      L+  L S  LS    HI     + S+  NW+
Sbjct: 399 LHCLPWTPFLVQVVA-ISGFGGASLMIALISDFLSVMTIHIHLLYLASSRLYNWQ 452


>SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit
           Spo6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = -2

Query: 323 PQVCLGYNLIVEYKSSNELNALKSDLLCRICFPILNS-IICSVSDTRLQCNLD 168
           P++C   +++   K++N    L   LL RI F +LNS  + + S + LQ  LD
Sbjct: 176 PEMCQPNDVLYLSKTANMKIWLLDKLLNRILFTLLNSDSLVNTSASCLQSLLD 228


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,410,158
Number of Sequences: 5004
Number of extensions: 47830
Number of successful extensions: 118
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)