Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23p05
         (597 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating...    22   5.3  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   6.9  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    21   6.9  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   9.2  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   9.2  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   9.2  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    21   9.2  

>S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating
           peptide protein.
          Length = 50

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 11/43 (25%), Positives = 17/43 (39%)
 Frame = -1

Query: 381 SLFRRQVLLCEETLLKSRMTTGMFGIQSNCRIQIFK*TQCAKV 253
           S+ R         L+ S   T    I+ NC+  + K   C K+
Sbjct: 3   SMLRCTFFFLSVILITSYFVTPTMSIKCNCKRHVIKPHICRKI 45


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -1

Query: 390 RDASLFRRQVLLCEET 343
           RD SLF    L C+ET
Sbjct: 95  RDCSLFPGNALSCKET 110


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 201 CKRYKITVQFGCGLVKCS 148
           CK Y I +   CG+V+C+
Sbjct: 46  CK-YGIAMSSACGIVQCA 62


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = -1

Query: 462 FFQLSHLDGEAEERLICATCVLRLRDASLFRRQVLLCEET 343
           FF  S   G   +  +C  CV  L   +   RQV  C+ T
Sbjct: 529 FFSGSCAPGAPLDSKLCQQCVGNLASNNDRIRQVTKCKAT 568


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = -1

Query: 462 FFQLSHLDGEAEERLICATCVLRLRDASLFRRQVLLCEET 343
           FF  S   G   +  +C  CV  L   +   RQV  C+ T
Sbjct: 529 FFSGSCAPGAPLDSKLCQQCVGNLASNNDRIRQVTKCKAT 568


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = -1

Query: 462 FFQLSHLDGEAEERLICATCVLRLRDASLFRRQVLLCEET 343
           FF  S   G   +  +C  CV  L   +   RQV  C+ T
Sbjct: 529 FFSGSCAPGAPLDSKLCQQCVGNLASNNDRIRQVTKCKAT 568


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 190 VSLTEQIIEFNIGKQILHRRSD 255
           ++L EQI+   I KQ LH   D
Sbjct: 37  LNLMEQILLAKIEKQNLHESDD 58


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,300
Number of Sequences: 438
Number of extensions: 3178
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)