Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23o24
         (553 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr...    32   0.049
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|...    28   0.80 
SPBC26H8.14c |cox17||metallochaperone Cox17|Schizosaccharomyces ...    28   1.1  
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam...    27   2.4  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    26   3.2  
SPBC25H2.09 |||DUF1690 family protein|Schizosaccharomyces pombe|...    26   4.2  
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc...    25   5.6  
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    25   7.4  

>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 32.3 bits (70), Expect = 0.049
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +3

Query: 312 VENLKKEHQLINQIIETEYEKKINSINSICEPPKVTHEKLLK 437
           VENL+KE      ++ETE EK+       CE   +  +KL K
Sbjct: 147 VENLRKELDKYKDLVETEAEKRAAITKEECEKSWLEQQKLYK 188


>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 28.3 bits (60), Expect = 0.80
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = +3

Query: 369 EKKINSINSI-CEPPKVTHEKLLKLNPCFQMRTKMIQC-YTENPHQPLKCSEAVQAFSNC 542
           +KK   I  I C+  +    K  +L+PCFQ      QC Y E+P +     E V+A    
Sbjct: 8   DKKNQEIFRISCQRCRQRKIKCDRLHPCFQCVKSNSQCFYPEDPIRRRAPKEYVEALERQ 67

Query: 543 VAY 551
           +A+
Sbjct: 68  IAF 70


>SPBC26H8.14c |cox17||metallochaperone Cox17|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 70

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 12/57 (21%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +3

Query: 381 NSINSICEP-PKVTHEKLLKLNPCFQMRTKMIQCYTENPHQPLKCSEAVQAFSNCVA 548
           ++   + EP P  + EK      C + +     C  ++ + P++C++ ++A   C+A
Sbjct: 8   STATKVSEPAPIASEEKPKPCCACPETKQARDACMLQSSNGPIECAKLIEAHKKCMA 64


>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
 Frame = -3

Query: 407 WFANTVNRINFFFILGFNYLID*LMLFFEVLH-SPRPII---SISLLFV 273
           +F    N I+ F  +GF        LFF+VL    RPII   S+S++F+
Sbjct: 364 YFKGLSNIISSFAFIGFTLFATLSSLFFKVLKIHRRPIIVFGSLSIIFI 412


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +3

Query: 303 SWRVENLKKEHQLINQIIETEYEKKINSINSICEPPKVTHEKLLKL 440
           SW +++LKK    IN++ E E E        +  P K  ++K +KL
Sbjct: 411 SWTIKSLKKIQNRINELPEEERE-TYTLEEGLGLPSKSIYKKTIKL 455


>SPBC25H2.09 |||DUF1690 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 162

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = +3

Query: 423 EKLLKLNPCFQMRTKMIQCYTENPHQPLKCSEAVQAFS 536
           E  +KL     +R+ +++C +E+P + L C    + F+
Sbjct: 111 ELKIKLKEVESIRSDLLKCMSEHPDKSLICHPLAEKFA 148


>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
           Sap155|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1188

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
 Frame = +3

Query: 300 WSWRVENLK-KEHQLINQIIETEYEKKINSINSICEPP--KVTHEKLLKLNP 446
           W    EN    EH + N I E    K++N +     PP   +T E+L +L P
Sbjct: 238 WDKAPENFTISEHVIENGISEDLINKEVNVVEEKLRPPVRLLTEEELNELLP 289


>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 318 NLKKEHQLINQIIETEYEKKINS 386
           NL+  H+LI+ I+ T +  KINS
Sbjct: 34  NLRLYHELISVIVPTFWNGKINS 56


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,038,903
Number of Sequences: 5004
Number of extensions: 38292
Number of successful extensions: 109
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)