Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23o24
         (553 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0024 - 164618-165139,166884-166949,167046-167216,167321-16...    44   1e-04
03_06_0603 + 34999083-34999703,35000092-35000177,35000400-350007...    32   0.26 
10_08_0505 + 18384392-18384454,18384593-18384679,18385878-183864...    27   7.5  
04_04_1598 + 34698260-34698316,34698438-34699544                       27   10.0 
02_01_0795 + 5959896-5960061,5960415-5960700,5961664-5961790           27   10.0 

>05_01_0024 -
           164618-165139,166884-166949,167046-167216,167321-167422,
           167538-167600,167679-167825,168234-168359,168742-168921,
           169183-169322,169688-169861,170096-170123
          Length = 572

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 17/34 (50%), Positives = 21/34 (61%)
 Frame = +3

Query: 444 PCFQMRTKMIQCYTENPHQPLKCSEAVQAFSNCV 545
           PC + R+   QCY  N   PLKC+EAV+ F  CV
Sbjct: 526 PCTEERSNCRQCYVSNAQDPLKCAEAVKRFEACV 559


>03_06_0603 +
           34999083-34999703,35000092-35000177,35000400-35000796,
           35000906-35001154,35001522-35001749,35002524-35002973,
           35003848-35003961,35004171-35004216,35004408-35004574
          Length = 785

 Score = 32.3 bits (70), Expect = 0.26
 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
 Frame = +3

Query: 279 QQGDGDYWS----WRVENLKKEHQLINQIIETEYEKKINSINSICEPPKVTHEKL 431
           +Q +GD++S    WR+E L  +H L+  ++ET+  K      SI E  +V +E L
Sbjct: 481 EQVEGDFYSFKGKWRLEQLGDQHTLLKYMVETKMHKDTFLSESILE--EVIYEDL 533


>10_08_0505 +
           18384392-18384454,18384593-18384679,18385878-18386409,
           18387042-18387564,18387734-18387791
          Length = 420

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 291 GDYWSWRVENLKKEHQLINQIIETEYEKKI 380
           G YWSW   +   E+QL  +  + E  KK+
Sbjct: 358 GVYWSWNNNSASFENQLSEEASDPEKAKKV 387


>04_04_1598 + 34698260-34698316,34698438-34699544
          Length = 387

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 291 GDYWSWRVENLKKEHQLINQIIETEYEKKI 380
           G YWSW  ++   E+QL  +  + E  +K+
Sbjct: 347 GVYWSWNKDSASFENQLSQEASDPEKARKL 376


>02_01_0795 + 5959896-5960061,5960415-5960700,5961664-5961790
          Length = 192

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +3

Query: 78  LKIIWYIMGIVTSNHTRRISFDNTFAINSALALQTTIKGETP 203
           +K+ W + G   S+  RRI+FD   + NS +AL   ++   P
Sbjct: 118 VKVYWLLPGKTFSDGLRRINFD--ASTNSMVALVPRLRSSRP 157


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,073,045
Number of Sequences: 37544
Number of extensions: 204104
Number of successful extensions: 437
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)