Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23o24
         (553 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    26   0.29 
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    23   2.7  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   3.6  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 25.8 bits (54), Expect = 0.29
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -1

Query: 169 KAEFIANVLSKLIRLV*LLVTIPIIYQIIFKT 74
           +AE++A VL      + +++ + IIY IIF T
Sbjct: 22  EAEYLAKVLGPKYLSMRMVIPLTIIYMIIFVT 53


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = +3

Query: 93  YIMGIVTSNHTRRISFDNTFAINS 164
           ++  + TSNH ++I   +  A+N+
Sbjct: 156 HVFDLKTSNHLKQIEIPHDIAVNA 179


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
 Frame = -2

Query: 540 NY*KPEQLPNTL-----KVDVDFLCSIESSLSSFGSMDS 439
           NY      P+TL     K+D D  CSIE S++S  S  S
Sbjct: 379 NYLTVHSFPSTLNIPSVKIDEDQKCSIE-SITSVNSTSS 416


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,522
Number of Sequences: 438
Number of extensions: 2731
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)