Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23o22
         (509 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomy...   108   4e-25
SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomy...   107   1e-24
SPCC4F11.02 |ptc1||protein phosphatase 2C Ptc1|Schizosaccharomyc...    44   2e-05
SPAC22E12.17c |glo3||ARF GTPase activating protein|Schizosacchar...    29   0.53 
SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase...    29   0.53 
SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyc...    29   0.53 
SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb...    26   3.8  
SPAC17A2.08c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   8.7  
SPCC622.14 |||GTPase activating protein |Schizosaccharomyces pom...    25   8.7  

>SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 370

 Score =  108 bits (260), Expect = 4e-25
 Identities = 51/111 (45%), Positives = 73/111 (65%), Gaps = 4/111 (3%)
 Frame = +3

Query: 189 MGQTLSEPVTEKQSATCQDSRFLVGSSCMQGWRVSMDDSHTQILSLPD----DPGTAFFA 356
           MGQTLSEPV +K S++  D     G S MQGWR+SM+D+H  +L+  D    +P T+FF 
Sbjct: 1   MGQTLSEPVLDKHSSSGGDRWLHFGVSHMQGWRISMEDAHCALLNFTDSNSSNPPTSFFG 60

Query: 357 VYDGHGGSNIAEHAGXHLHKYITARPEYHLGNIEEALKQGFLDLDRAMLEE 509
           V+DGHGG  +A++   HL   I ++P +  GN +EALK GFL  D A++++
Sbjct: 61  VFDGHGGDRVAKYCRQHLPDIIKSQPSFWKGNYDEALKSGFLAADNALMQD 111


>SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 414

 Score =  107 bits (256), Expect = 1e-24
 Identities = 53/111 (47%), Positives = 72/111 (64%), Gaps = 4/111 (3%)
 Frame = +3

Query: 189 MGQTLSEPVTEKQSATCQDSRFLVGSSCMQGWRVSMDDSHTQILSLP----DDPGTAFFA 356
           MGQTLSEPVTEK S    +   L G S MQGWR+SM+D+H+ ILS+      DP   FFA
Sbjct: 1   MGQTLSEPVTEKHSVNGSNEFVLYGLSSMQGWRISMEDAHSAILSMECSAVKDP-VDFFA 59

Query: 357 VYDGHGGSNIAEHAGXHLHKYITARPEYHLGNIEEALKQGFLDLDRAMLEE 509
           VYDGHGG  +A+  G +L + +   P++  G+   ALK  FL+ D+A+L++
Sbjct: 60  VYDGHGGDKVAKWCGSNLPQILEKNPDFQKGDFVNALKSSFLNADKAILDD 110


>SPCC4F11.02 |ptc1||protein phosphatase 2C Ptc1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 347

 Score = 43.6 bits (98), Expect = 2e-05
 Identities = 18/49 (36%), Positives = 27/49 (55%)
 Frame = +3

Query: 276 QGWRVSMDDSHTQILSLPDDPGTAFFAVYDGHGGSNIAEHAGXHLHKYI 422
           Q WR SM+D+H  +     +    F AVYDGH G   +++   +LHK +
Sbjct: 80  QRWRRSMEDTHICLYDFGGNQDDGFVAVYDGHAGIQASDYCQKNLHKVL 128


>SPAC22E12.17c |glo3||ARF GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 486

 Score = 28.7 bits (61), Expect = 0.53
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 505 SSIARSRSRKPCFNASSMLPRWYSGRAVIYLC 410
           +S+   R  K CF+  +  P W S    IYLC
Sbjct: 13  TSLRSQRDNKVCFDCGAKNPTWSSTTFGIYLC 44


>SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 444

 Score = 28.7 bits (61), Expect = 0.53
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +3

Query: 297 DDSHTQILSLPDDPGTAFF-AVYDGHGGSNIAEHAGXHL 410
           +D H +++    D G  +F  ++DGH G N +     HL
Sbjct: 98  EDDHVEVIDRNIDEGNWYFWGIFDGHSGWNTSLFLRQHL 136


>SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 28.7 bits (61), Expect = 0.53
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +3

Query: 348 FFAVYDGHGGSNIAEHAGXHLHKYITARPEYHLGNIEEALKQ 473
           F+ ++DGHGG+  +E    +L K I       L + E+ LK+
Sbjct: 87  FYGLFDGHGGTECSEFLSTNLGKII---ENQDLNDTEKILKE 125


>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 300 DSHTQILSLPDDPGTAFFAVYD 365
           D  +Q   LPD+  T FF +Y+
Sbjct: 272 DQESQFSRLPDERATMFFTIYE 293


>SPAC17A2.08c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 270

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 435 EYHLGNIEEALKQGFLDLDRAML 503
           E  +   EE +K  F+DLD+ +L
Sbjct: 240 ELEINEQEEKIKHSFIDLDKTLL 262


>SPCC622.14 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 309

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -2

Query: 499 IARSRSRKPCFNASSMLPRWYSGRAVIYLC 410
           + R    K CF+  +  P+W S    I++C
Sbjct: 8   LTRLPENKKCFDCDAPNPQWASCNLGIFIC 37


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,106,946
Number of Sequences: 5004
Number of extensions: 41233
Number of successful extensions: 115
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)