Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23o21
         (150 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0074 + 8095355-8096575,8096664-8096901,8096990-8097667,809...    25   8.4  
05_03_0071 - 8044217-8045142,8045303-8045411,8045634-8046854           25   8.4  
04_03_0183 + 12352147-12352179,12352390-12353349,12353815-123539...    25   8.4  
04_01_0511 + 6678765-6678801,6678904-6679923,6680012-6680718           25   8.4  

>05_03_0074 +
           8095355-8096575,8096664-8096901,8096990-8097667,
           8097787-8097974
          Length = 774

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 98  YLYTVVSFCIYRKVKLIDV 42
           +L  V SFC+  KVK++D+
Sbjct: 593 FLGKVTSFCVKHKVKVVDM 611


>05_03_0071 - 8044217-8045142,8045303-8045411,8045634-8046854
          Length = 751

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 98  YLYTVVSFCIYRKVKLIDV 42
           +L  V SFC+  KVK++D+
Sbjct: 526 FLGKVTSFCVKHKVKVVDM 544


>04_03_0183 +
           12352147-12352179,12352390-12353349,12353815-12353998,
           12354087-12354799
          Length = 629

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 98  YLYTVVSFCIYRKVKLIDV 42
           +L  V SFC+  KVK++D+
Sbjct: 498 FLGKVTSFCVKHKVKVVDM 516


>04_01_0511 + 6678765-6678801,6678904-6679923,6680012-6680718
          Length = 587

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 98  YLYTVVSFCIYRKVKLIDV 42
           +L  V SFC+  KVK++D+
Sbjct: 459 FLGKVTSFCVKHKVKVVDM 477


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,594,588
Number of Sequences: 37544
Number of extensions: 25769
Number of successful extensions: 50
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 14,793,348
effective HSP length: 30
effective length of database: 13,667,028
effective search space used: 259673532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)