Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23o21
         (150 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   1.3  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   1.8  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    20   3.1  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    20   3.1  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    19   4.1  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    19   4.1  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    19   4.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             19   5.4  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      18   9.4  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.0 bits (42), Expect = 1.3
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -2

Query: 125 TIFYSHLYNYLYTVVS 78
           T FY+  ++YL+T+ S
Sbjct: 90  TYFYNGKHSYLHTITS 105


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 6/19 (31%), Positives = 13/19 (68%)
 Frame = +1

Query: 10  FMLNEMSRYAKTSISFTFL 66
           F++  + RY ++++  TFL
Sbjct: 68  FLMTFLRRYGQSAVGLTFL 86


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = +3

Query: 36  CKNIDKFYFSIN 71
           C N  K Y++IN
Sbjct: 101 CNNYKKLYYNIN 112


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = +3

Query: 36  CKNIDKFYFSIN 71
           C N  K Y++IN
Sbjct: 101 CNNYKKLYYNIN 112


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = +3

Query: 36  CKNIDKFYFSIN 71
           C N  K Y++IN
Sbjct: 101 CNNYRKLYYNIN 112


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +2

Query: 65  YKYKN*PLCTNNYRGVN 115
           YKY N     NNY   N
Sbjct: 322 YKYSNYNNYNNNYNNYN 338


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
          finger domain-Z1 isoform protein.
          Length = 111

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +3

Query: 27 E*VCKNIDKFYFSINTKTNH 86
          E +C    + Y S+N+  NH
Sbjct: 32 EPICNICKRVYSSLNSLRNH 51


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 39  KNIDKFYFSINTKTNH 86
           K +DK YF ++ K  H
Sbjct: 422 KPLDKCYFCLDGKLPH 437


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 18.2 bits (35), Expect = 9.4
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = +3

Query: 24  NE*VCKNIDKFYFSINTKTNH 86
           N  VC    K + ++N+  NH
Sbjct: 400 NSAVCALCHKVFRTLNSLNNH 420


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,680
Number of Sequences: 438
Number of extensions: 548
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 30
effective length of database: 133,203
effective search space used:  2530857
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)