Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte23o19
(649 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|c... 66 4e-12
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 31 0.14
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom... 28 1.3
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr... 27 1.8
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 27 2.3
SPBC776.02c |dis2|sds1, bws1|serine/threonine protein phosphatas... 27 3.1
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 26 4.1
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ... 26 5.4
SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr 1|... 26 5.4
SPAC1093.02 |||pyridoxamine 5'-phosphate oxidase |Schizosaccharo... 25 9.4
>SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|chr
1|||Manual
Length = 320
Score = 66.1 bits (154), Expect = 4e-12
Identities = 48/134 (35%), Positives = 65/134 (48%), Gaps = 4/134 (2%)
Frame = +2
Query: 224 IWVLGKKYSAIQDL---DRIRRDITSIIWCTYRKGFVPIGDEGLTSDKGWGCMLRCGQMV 394
IW LG Y I+D ++ D S+I TYR G G E +TSD GWGCM+R Q +
Sbjct: 26 IWFLGHSYK-IEDSQWPEKFLYDSFSLITITYRSGIE--GLENMTSDTGWGCMIRSTQTL 82
Query: 395 LGVALVRVHLSVDWVWSPETRDPTYLKIIQRFEERKQAPYSIHQVALMGASE-GKEVGQW 571
L L + PE + +I+ F + AP+SIHQ MG + GQW
Sbjct: 83 LANCL--------RICYPEKQ---LKEILALFADEPSAPFSIHQFVTMGKTLCDINPGQW 131
Query: 572 FGPNTIAQVLKKLT 613
FGP T + +L+
Sbjct: 132 FGPTTSCSCVARLS 145
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 31.1 bits (67), Expect = 0.14
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +3
Query: 150 LICVIYRERMVIMLNLTIFLKQRKVSGYWGKN 245
L+ ++Y R+ + LNLT Q V GYWG N
Sbjct: 7 LLLLVYSARLALSLNLT---NQTAVLGYWGSN 35
>SPBC30B4.04c |sol1||SWI/SNF complex subunit
Sol1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 865
Score = 27.9 bits (59), Expect = 1.3
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = -2
Query: 462 GSLVSGDHTQSTDKCTLTRATPNTICPHRNIQPHPLSEVKPSSP 331
GSL S + + + A P T+ RN P+P + +P+ P
Sbjct: 325 GSLHSKSPSPAFTANRFSPAAPTTVSSERNAPPYPSAPTRPTPP 368
>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 583
Score = 27.5 bits (58), Expect = 1.8
Identities = 21/100 (21%), Positives = 41/100 (41%), Gaps = 2/100 (2%)
Frame = -2
Query: 396 NTICPHRNIQPHPLSEVKPSSPIG--TKPFLYVHHIIDVISLLIRSKSCIALYFFPSTQI 223
+T+ PHP S V+P P G P L V + + ++ C+ + +P +
Sbjct: 140 DTVISDSPTSPHPPSFVQPHPPYGIFAAPILDVRVLTNPGAVKRTYNLCLDISKYPLLEG 199
Query: 222 LSFVLGISLGSTLLPSAPDR*HISNTASILNHSFFTKRFI 103
+ +G S G S + H+++ I H + + +
Sbjct: 200 KDWKIGGSFGIMPPNSDAEVLHLAHLLKIPQHELYVTKVL 239
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 27.1 bits (57), Expect = 2.3
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -3
Query: 422 SVL*QEQHLIPSVHIVTYSPILYQKSNLHHQLVQ 321
+VL ++ +P + +T SP +K NL+H+L Q
Sbjct: 169 AVLSKKHFTLPRIFGMTASPFTGKKGNLYHRLYQ 202
>SPBC776.02c |dis2|sds1, bws1|serine/threonine protein phosphatase
PP1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 327
Score = 26.6 bits (56), Expect = 3.1
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 562 NFFSFRGTHQCHLMDRIRCLFPFFKPLYDL 473
NFF RG H+C ++RI + K Y++
Sbjct: 116 NFFILRGNHECASINRIYGFYDECKRRYNI 145
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 26.2 bits (55), Expect = 4.1
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +2
Query: 272 IRRDITSIIWCTYRKGFVPIGDEGLTSDKGWGCMLRCGQMVL 397
IR +TSI + RK FV DE L + + GC++ +L
Sbjct: 1317 IRNRLTSIRFIVNRKFFVCFKDETLPNVEIEGCLIEKSNAIL 1358
>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
Length = 533
Score = 25.8 bits (54), Expect = 5.4
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -3
Query: 410 QEQHLIPSVHIVTYSPILYQKSN 342
Q+QH IP ++ YSP+L S+
Sbjct: 340 QQQHRIPKLNASNYSPLLSPSSH 362
>SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 376
Score = 25.8 bits (54), Expect = 5.4
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +3
Query: 237 GKNTVLYKIWIVLEE-ISHQ*YGVRTEKALYQLVMKV 344
G T+LY IW+VL + Y + K L +L+ K+
Sbjct: 2 GFATILYSIWVVLSSFVILSAYQLEVRKFLVKLLSKI 38
>SPAC1093.02 |||pyridoxamine 5'-phosphate oxidase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 231
Score = 25.0 bits (52), Expect = 9.4
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = +2
Query: 449 ETRDPTYLKIIQRFEERKQAPYSIHQVALMGASEGKEVGQWFGPNTIAQVLK 604
E D T+ K+I + S+H+ ALMG QWF T + +K
Sbjct: 3 ENTDSTHEKLIFAPSRYQYEKSSLHRDALMGKDPLVLFNQWFQEATDDEGIK 54
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,860,935
Number of Sequences: 5004
Number of extensions: 65241
Number of successful extensions: 159
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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