Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23o11
         (621 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPYUG7.06 |mug67||PPPDE peptidase family |Schizosaccharomyces ...    36   0.006
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    26   3.8  
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch...    25   6.7  
SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase Ubp4|Schizos...    25   8.8  

>SPAPYUG7.06 |mug67||PPPDE peptidase family |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 201

 Score = 35.5 bits (78), Expect = 0.006
 Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 6/97 (6%)
 Frame = +2

Query: 173 GIWHTAIVAYDREFFYGANGITSCTPG-TTQLGPPHRVQRLGETF-VPFAVF----VEYL 334
           GI+HT +V   +E+ +GA+ I   T    T   PP    R   +  +P        V+ +
Sbjct: 26  GIYHTGLVLEGKEYAFGAHEIPGSTGVFATMPRPPLEGCRWRCSIALPNCTLPKPDVDRI 85

Query: 335 QGLAGSTYLPSQYNLLEHNCNHFSDEVAEFLCDARVP 445
                  +    Y+LLE NCNHF++  A  L  + +P
Sbjct: 86  LIRLSQEFTGLSYSLLERNCNHFTNAAAIELTGSPIP 122


>SPBC1826.01c |mot1||TATA-binding protein associated factor
            Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 500  LHALLADLLPRSGDAPQSLYSSGA 571
            LH L+ D++P  GDA  +++  GA
Sbjct: 1234 LHLLVEDVVPLLGDASSTIHRQGA 1257


>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 463

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = -1

Query: 273 GGPSCVVPGVQLVMPLAP*KNSLSY-ATMAVCHMPSTSRPMIVGANKEAT 127
           G PSCV   V  V+P  P  +S +Y +T +  H  +++ P  + + K +T
Sbjct: 153 GNPSCVGIAVLAVLP-QPISSSSTYNSTTSSYHNSTSTPPPTITSTKAST 201


>SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase
           Ubp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 344 AGSTYLPSQYNLLEHNCNHFSDEVAEFLCD 433
           +G  Y+PS YNL    C++   E   ++ D
Sbjct: 350 SGIGYIPSNYNLFAFICHYGQLENGHYISD 379


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,893,944
Number of Sequences: 5004
Number of extensions: 35382
Number of successful extensions: 99
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)