Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23o11
         (621 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53181-11|AAM29689.1|  315|Caenorhabditis elegans Hypothetical p...    37   0.013
U53181-10|AAA93489.2|  334|Caenorhabditis elegans Hypothetical p...    37   0.013
AF099920-2|AAL32226.2|  437|Caenorhabditis elegans Hypothetical ...    29   2.7  
Z93374-3|CAB07558.2|  363|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z82270-3|CAB63205.1|  667|Caenorhabditis elegans Hypothetical pr...    29   3.5  
AF273815-1|AAG15164.1|  365|Caenorhabditis elegans nuclear recep...    29   3.5  
AF003740-9|AAC48140.1|  852|Caenorhabditis elegans Hypothetical ...    29   3.5  

>U53181-11|AAM29689.1|  315|Caenorhabditis elegans Hypothetical
           protein F36D4.5b protein.
          Length = 315

 Score = 36.7 bits (81), Expect = 0.013
 Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 9/100 (9%)
 Frame = +2

Query: 173 GIWHTAIVAYDREFFYGAN-----GITSCTP-GTTQLGPPHRVQR---LGETFVPFAVFV 325
           GI+H+ I  +  E+ YG +     G+   +P    +LG   + +    +GET    +   
Sbjct: 33  GIFHSGIEVFGVEYAYGGHPYQFSGVFENSPQDAEELGETFKFKESIVVGETERSTSDIR 92

Query: 326 EYLQGLAGSTYLPSQYNLLEHNCNHFSDEVAEFLCDARVP 445
           + ++ L G  +   +Y+L+  NCNHFS  +A  L    +P
Sbjct: 93  KLIKSL-GEDFRGDRYHLISRNCNHFSAVLARELTGKDIP 131


>U53181-10|AAA93489.2|  334|Caenorhabditis elegans Hypothetical
           protein F36D4.5a protein.
          Length = 334

 Score = 36.7 bits (81), Expect = 0.013
 Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 9/100 (9%)
 Frame = +2

Query: 173 GIWHTAIVAYDREFFYGAN-----GITSCTP-GTTQLGPPHRVQR---LGETFVPFAVFV 325
           GI+H+ I  +  E+ YG +     G+   +P    +LG   + +    +GET    +   
Sbjct: 52  GIFHSGIEVFGVEYAYGGHPYQFSGVFENSPQDAEELGETFKFKESIVVGETERSTSDIR 111

Query: 326 EYLQGLAGSTYLPSQYNLLEHNCNHFSDEVAEFLCDARVP 445
           + ++ L G  +   +Y+L+  NCNHFS  +A  L    +P
Sbjct: 112 KLIKSL-GEDFRGDRYHLISRNCNHFSAVLARELTGKDIP 150


>AF099920-2|AAL32226.2|  437|Caenorhabditis elegans Hypothetical
           protein H06H21.6 protein.
          Length = 437

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 19/57 (33%), Positives = 28/57 (49%)
 Frame = +2

Query: 251 GTTQLGPPHRVQRLGETFVPFAVFVEYLQGLAGSTYLPSQYNLLEHNCNHFSDEVAE 421
           GT+ L  P R Q L  +     V   Y   L G  ++ S+ +LLE   N  SD+++E
Sbjct: 100 GTSSLQQPDREQHLEHSSAISRVL--YTSELLGEHHIRSKADLLEDIKNFLSDQISE 154


>Z93374-3|CAB07558.2|  363|Caenorhabditis elegans Hypothetical
           protein C06C6.4 protein.
          Length = 363

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -1

Query: 330 YSTNTANGTKVSPRRCTRCGGPSCVVPGVQLVMPL-AP*KNSLSYATMAV 184
           YS +     K+SP+   R   P     GV LV+P+ A   NS+ Y  +A+
Sbjct: 226 YSGSMYGDNKISPKEILRVFEPFLTYYGVVLVLPMNAKMFNSIEYMALAM 275


>Z82270-3|CAB63205.1|  667|Caenorhabditis elegans Hypothetical
           protein F53H2.3 protein.
          Length = 667

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = -1

Query: 327 STNTANGTKVSPRRCTRCGGPSCVVPGVQLVMPLAP*KNSLSY 199
           S ++  GT +     T  G PSC  PG+      A   N+  Y
Sbjct: 244 SESSEEGTAIISTALTSSGAPSCATPGISAATTTANGNNNEEY 286


>AF273815-1|AAG15164.1|  365|Caenorhabditis elegans nuclear receptor
           NHR-63 protein.
          Length = 365

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -1

Query: 330 YSTNTANGTKVSPRRCTRCGGPSCVVPGVQLVMPL-AP*KNSLSYATMAV 184
           YS +     K+SP+   R   P     GV LV+P+ A   NS+ Y  +A+
Sbjct: 228 YSGSMYGDNKISPKEILRVFEPFLTYYGVVLVLPMNAKMFNSIEYMALAM 277


>AF003740-9|AAC48140.1|  852|Caenorhabditis elegans Hypothetical
           protein C41D11.6 protein.
          Length = 852

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/21 (61%), Positives = 13/21 (61%)
 Frame = +1

Query: 553 PVLERGAGGAPGQPRLPHAQQ 615
           PVL  GAGGAP  P LP   Q
Sbjct: 62  PVLAAGAGGAPNVPILPPQNQ 82


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,874,815
Number of Sequences: 27780
Number of extensions: 215739
Number of successful extensions: 919
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)