Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23o11
         (621 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    25   0.60 
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    25   0.79 
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   1.8  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 25.0 bits (52), Expect = 0.60
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 177 YGTQPSWRTTGSSSTGPMASPVALRAPR 260
           Y T+     TG++  GP   P+A+ +PR
Sbjct: 537 YNTRAENHQTGTAKMGPSYDPMAVVSPR 564


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 24.6 bits (51), Expect = 0.79
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 233 ITSCTPGTTQLGPPHRVQRLG 295
           + +CT G  +LG P R+ + G
Sbjct: 531 VINCTTGKDELGKPSRISKQG 551


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 20/77 (25%), Positives = 28/77 (36%), Gaps = 1/77 (1%)
 Frame = -1

Query: 474 NSSGCCRMSLGTRASHRNSATSSEKWLQLCSSRLY-CDGK*VDPASPCRYSTNTANGTKV 298
           +SS    +S+    S   S+   E +L   S  +  C  K       C  S N+     V
Sbjct: 46  SSSNSDSLSMTIPPSIDRSSIHEESYLAESSRSIDPCASKYCGIGKECELSPNSTIAVCV 105

Query: 297 SPRRCTRCGGPSCVVPG 247
             R+C R   P C   G
Sbjct: 106 CMRKCPRRHRPVCASNG 122


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,007
Number of Sequences: 438
Number of extensions: 2455
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)