Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23o10
         (611 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha...    31   0.099
SPAC11G7.05c |||[acyl-carrier protein] S-malonyltransferase Mct1...    30   0.23 
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha...    29   0.70 
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce...    28   0.93 
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    26   4.9  
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt...    25   6.5  
SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14 |Schizo...    25   6.5  
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar...    25   8.6  

>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
            1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1011

 Score = 31.5 bits (68), Expect = 0.099
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
 Frame = -1

Query: 488  LDLSWITFHTWPPFEDLERMGTRSVGRPPTRWTDDLVRTAGSRWMRK-AEDR 336
            +D S  T H  P F+D+  +G++ +GR      D ++  AG+  MR+ AE+R
Sbjct: 887  VDFSLGTRHLMPAFDDVADIGSKRLGRDSL--PDAVIENAGTEAMRREAEER 936


>SPAC11G7.05c |||[acyl-carrier protein] S-malonyltransferase Mct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 318

 Score = 30.3 bits (65), Expect = 0.23
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +1

Query: 52  ASALAQSVTSVFACIIQNFFPSTNFYNEIH 141
           ASAL Q+ TS+ A  + + FP+ NF N ++
Sbjct: 123 ASALCQNPTSMLAITLTSRFPTDNFLNTVY 152


>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 496

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +1

Query: 91  CIIQNFFPSTNFYNEIHP 144
           C+I N FP+ NFY EI P
Sbjct: 123 CLIDNNFPTGNFYYEIGP 140


>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 413

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
 Frame = -3

Query: 435 TDGYQERGASSNQVDRRLSAHGGKSLDAEGGGPHS*VISSKSQFYSTTAAPS---FKLKR 265
           T+  Q  G+SS+ V    S     S  ++    HS V    SQF STT  PS        
Sbjct: 108 TNAAQVAGSSSSYV---YSVPPTNSTTSQASAKHSAVPHRSSQFQSTTLTPSTTDSSSTD 164

Query: 264 IPASRQVNTSSNYAN 220
           + +S  V+TS++ +N
Sbjct: 165 VSSSDSVSTSASSSN 179


>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 28/116 (24%), Positives = 46/116 (39%), Gaps = 1/116 (0%)
 Frame = -3

Query: 417 RGASSNQVDRRLSAHGGKSLDAEGGGPHS*VIS-SKSQFYSTTAAPSFKLKRIPASRQVN 241
           +G  S+  D  + + G         G  + ++S S+   +  T      L  +  S  VN
Sbjct: 383 KGEGSSHSDNVVLSDGNSVKKMNEDGADTSLLSVSEVTSHPPTEWTGSPLAHVLCSDVVN 442

Query: 240 TSSNYANYNFCEFDFYYAMSFFHCEVIRKNWLRMYFIIKIGTWEKILDDTRKY*RY 73
            S +      C  D  + ++FF  E + +        IKIG WEKI D   +  +Y
Sbjct: 443 LSVSTVFNLLCGSDTTWIINFFKSEKLTE--------IKIGKWEKIDDKWNRKVQY 490


>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
           subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = -3

Query: 219 YNFCEFDFYYAM---SFFHCEVIRKNWLRMYFIIKIGTWEKILD 97
           Y   +F+F   +   SF    +++ N  R+Y+ IK+   +KI+D
Sbjct: 196 YGIQDFNFLQTLGTGSFGRVHLVQSNHNRLYYAIKVLEKKKIVD 239


>SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 566

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = -3

Query: 408 SSNQVDRRLSAHGGKSLDAEGGGPHS*VISSKSQFYSTTAAPSFKLKRIPASRQVNTSS 232
           +  + DR++   G  +   +G G  S  +  KS F S       K K +P SR V+ S+
Sbjct: 87  TEEESDRKIDGTGSSAEGGDGSGTDSISVIKKSFFKS-----GRKKKDVPKSRNVSRSN 140


>SPAC1B3.17 |clr2||chromatin silencing protein
           Clr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = -3

Query: 588 GISKCWLCMSCLYLT*NISNILYRLSFLPISESF 487
           G  K W+   C+  T ++ ++L + SF+ IS+ +
Sbjct: 374 GAEKLWINDLCVISTSSLPSVLQKTSFMYISDIY 407


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,717,445
Number of Sequences: 5004
Number of extensions: 59220
Number of successful extensions: 169
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)