Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23o10
         (611 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0468 - 23172561-23174201                                         29   2.2  
01_05_0436 + 22134275-22134387,22134481-22135249,22137024-221370...    29   2.2  
11_01_0225 + 1761282-1762232,1762601-1762726,1762818-1763135           29   2.9  
11_06_0513 + 24466131-24469487                                         28   6.7  
03_01_0653 - 4778265-4778902,4779738-4779853,4779982-4780051,478...    28   6.7  
04_03_0103 + 11288977-11290353,11291962-11292075,11294987-112954...    27   8.9  

>02_04_0468 - 23172561-23174201
          Length = 546

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -1

Query: 425 TRSVGRPPTRWTDDLVRTAGSRWMR 351
           T ++GR P  W DD       RWMR
Sbjct: 409 TYAIGRDPASWGDDAAAFRPERWMR 433


>01_05_0436 +
           22134275-22134387,22134481-22135249,22137024-22137086,
           22137375-22137755,22137900-22138001
          Length = 475

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +1

Query: 367 PAVRTKSSVHLVGGRPTLLVPIRSRSSNGGHV 462
           P  R   + H   G+P +  P + R  NGGHV
Sbjct: 192 PFSRDSGAHHQPAGQPAMAAPQQPRGGNGGHV 223


>11_01_0225 + 1761282-1762232,1762601-1762726,1762818-1763135
          Length = 464

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = -3

Query: 438 GTDGYQERGASSNQVDRRLSAHGGKSLDAEGGG 340
           GT G+QERGASS+    R    GG + + E GG
Sbjct: 50  GTGGHQERGASSSAGGLR---EGGAAREVERGG 79


>11_06_0513 + 24466131-24469487
          Length = 1118

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 18/71 (25%), Positives = 28/71 (39%)
 Frame = -3

Query: 450 VRGPGTDGYQERGASSNQVDRRLSAHGGKSLDAEGGGPHS*VISSKSQFYSTTAAPSFKL 271
           V  PG++G   RG   ++V   L+ H G+ L     G HS  +   S     +       
Sbjct: 513 VNNPGSNGGIRRGCMMHRVLHILARHKGQELYKAIVGDHSAALKEHSNIRYMSLTVDHTT 572

Query: 270 KRIPASRQVNT 238
             +P S   +T
Sbjct: 573 TELPGSLTAHT 583


>03_01_0653 -
           4778265-4778902,4779738-4779853,4779982-4780051,
           4780189-4780402
          Length = 345

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = +2

Query: 251 REAGIRFSLKDGAAVVL*N*DFELMTHECGPPPSASNDFPPCA 379
           R  G R + K  +A    +   EL   E  PP S S+D PP A
Sbjct: 183 RAGGARLAAKPVSARTNRSRPVELPVEETSPPSSTSSDKPPAA 225


>04_03_0103 +
           11288977-11290353,11291962-11292075,11294987-11295436,
           11295813-11295910,11296023-11296206,11296979-11297068,
           11301608-11301727,11301812-11302054,11302715-11302988,
           11303237-11303357,11303591-11303849
          Length = 1109

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = +2

Query: 353 ASNDFPPCALSRRSTWLEDAPRSWYPSVPGPRTEATYEK*STINLKLSE 499
           A N F   A++R++T   ++PR  Y  +   R  A  EK + + LKL E
Sbjct: 552 ADNSFVKVAMARQNTGAGESPRKSY--LKATRHVARTEKDAQVRLKLYE 598


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,220,222
Number of Sequences: 37544
Number of extensions: 388908
Number of successful extensions: 1231
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1230
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)