Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23o09
         (721 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.13 |trf1||telomeric DNA binding factor Trf1|Schizosacch...    29   0.51 
SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei...    27   2.0  
SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schi...    27   2.0  
SPAC23A1.02c |||phosphoprotein phosphatase |Schizosaccharomyces ...    27   2.7  
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    27   3.6  
SPBC19G7.02 |||4-amino-4-deoxychorismate lyase |Schizosaccharomy...    26   4.7  
SPBC4B4.06 |vps25||ESCRT II complex subunit Vps25|Schizosaccharo...    26   6.2  

>SPBC19G7.13 |trf1||telomeric DNA binding factor
           Trf1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = +2

Query: 263 IISQGGIQNNVVPEQFTANFDLRIALNVDLKEFE-NMIQKWCTEAGRGVTYEFEQKDPYT 439
           ++ Q   QN+ +  Q  A  +  I L  DL   + NM   +     +G+ Y F Q +P  
Sbjct: 33  MLQQLSEQNSELEPQNVAP-NAEIPLGFDLSGIQFNMTPDFYLRMNQGMDYAFNQPNPIA 91

Query: 440 TPTQL 454
           TP QL
Sbjct: 92  TPQQL 96


>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
           Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = +2

Query: 5   RRFLNNLNNYCSKTTNVIGVLDISLSSIIPFAPTMSDDVNNCGFSDIGIKNLFKNKTC 178
           R  LNN+    + T  V+   ++ +S +I  A +++    N G  +IG+ N    K C
Sbjct: 388 RDSLNNMLLGFNATMEVLTTKELKISGLIGHAVSLNKKSQNVGDIEIGLGNTNSWKMC 445


>SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein
           Usp105|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
 Frame = +2

Query: 263 IISQGGIQNNVVPEQFTANFDLRIAL-NVDLKEFENMIQKWCTEAGRGVTYEFEQKDPYT 439
           ++S G  Q  V   +     ++R  + N+ L+ F    QK   E  +  T+E E K PY 
Sbjct: 217 VVSAGSKQITVERGELEIEREMRARIYNIHLQIF----QKVQLETAKRWTFESEIKRPYF 272

Query: 440 TPTQLDDAN-IYWKAFKQTAEELG 508
              +LD+A  + W+ +    E  G
Sbjct: 273 HVKELDEAQLVNWRKYLDFEEVEG 296


>SPAC23A1.02c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 430

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 53  VIGVLDISLSSIIPFAPTMSDDVNNCGFSDIGIKNLFK 166
           VIG+  +SL  +  +    SD +N+  FS +GI  L K
Sbjct: 200 VIGINSLSLDDVQFYDANPSDIINSKSFSSLGILALSK 237


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 18/66 (27%), Positives = 30/66 (45%)
 Frame = +2

Query: 194 LLRDRKTNTHLNIYNTVSTNLFHIISQGGIQNNVVPEQFTANFDLRIALNVDLKEFENMI 373
           ++R   + ++L    + +T L   +SQ   Q+ +  EQF  NFD     N+   E  N +
Sbjct: 452 IIRIESSASYLKTSFSATTYLRSRLSQFASQSPLFREQFLLNFD--FTYNLSESEVYNTV 509

Query: 374 QKWCTE 391
              C E
Sbjct: 510 FNLCDE 515


>SPBC19G7.02 |||4-amino-4-deoxychorismate lyase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 231

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 145 YVGEATIINIVRHRRSEW 92
           +V EATI N+  HR  +W
Sbjct: 136 FVTEATIFNVAFHRNGQW 153


>SPBC4B4.06 |vps25||ESCRT II complex subunit
           Vps25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 175

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 22/99 (22%), Positives = 44/99 (44%), Gaps = 3/99 (3%)
 Frame = +2

Query: 185 IAPLLRDRKTNTHLNIYNTVSTNLFHIISQGGIQNNVVPEQFTAN-FDLRIALNVDLKEF 361
           I P L +     +  I+ T+  ++F  I +  ++ N+       N  D+       + E+
Sbjct: 47  INPELLESSLLHNSTIHRTLPLSVFREIVEDMVKQNLAEWTEKRNPKDVFWVYWRSISEW 106

Query: 362 ENMIQKWCTEAGR--GVTYEFEQKDPYTTPTQLDDANIY 472
            NMI KW ++ GR   +   +E ++ Y     LD+  ++
Sbjct: 107 GNMILKWLSDMGREGSICTFYELQEQYKEVDCLDEVLLH 145


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,880,272
Number of Sequences: 5004
Number of extensions: 59371
Number of successful extensions: 190
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)